Variant report

Variant	rs11186960
Chromosome Location	chr10:94142607-94142608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10509644	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1057848	0.91[ASW][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs10882031	0.81[MKK][hapmap]
rs11186868	0.83[MKK][hapmap]
rs11186884	0.83[MKK][hapmap]
rs11186894	0.85[JPT][hapmap];0.83[MKK][hapmap]
rs11186898	0.85[MKK][hapmap]
rs11186923	0.91[ASW][hapmap];0.86[JPT][hapmap];0.87[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap]
rs11186926	0.91[ASW][hapmap];0.86[JPT][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs11186956	0.83[ASN][1000 genomes]
rs11186957	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11186958	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186959	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186965	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186966	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186967	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186968	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186969	0.94[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17365265	1.00[YRI][hapmap]
rs1810810	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2019640	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2257625	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2257628	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2257636	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2259053	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2259373	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2259430	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2259433	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2260397	0.88[ASN][1000 genomes]
rs2265199	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2771266	0.82[EUR][1000 genomes]
rs2771268	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61875243	0.94[AFR][1000 genomes]
rs746842	0.86[JPT][hapmap]
rs7911784	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7912223	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs913645	0.82[ASN][1000 genomes]
rs913647	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv508600	chr10:94115025-94231917	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv975013	chr10:94137766-94200367	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186960	MARCH5	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94141400-94143000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr10:94141600-94142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:94141800-94142800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:94141800-94142800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:94141800-94143200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:94141800-94143600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:94142000-94142800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:94142000-94143400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:94142000-94146600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:94142000-94146600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:94142400-94142800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr10:94142600-94142800	Active TSS	ES-I3 Cell Line	embryonic stem cell

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