Variant report
| Variant | rs2260397 |
|---|---|
| Chromosome Location | chr10:94163116-94163117 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10882059 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11186959 | 0.88[ASN][1000 genomes] |
| rs11186960 | 0.88[ASN][1000 genomes] |
| rs11186965 | 0.94[ASN][1000 genomes] |
| rs11186966 | 0.94[ASN][1000 genomes] |
| rs11186967 | 0.94[ASN][1000 genomes] |
| rs11186968 | 0.94[ASN][1000 genomes] |
| rs11186969 | 0.94[ASN][1000 genomes] |
| rs1810810 | 0.92[ASN][1000 genomes] |
| rs2019640 | 0.92[ASN][1000 genomes] |
| rs2257625 | 0.94[ASN][1000 genomes] |
| rs2257628 | 0.94[ASN][1000 genomes] |
| rs2257636 | 0.85[ASN][1000 genomes] |
| rs2259053 | 0.94[ASN][1000 genomes] |
| rs2259373 | 0.94[ASN][1000 genomes] |
| rs2259430 | 0.94[ASN][1000 genomes] |
| rs2259433 | 0.94[ASN][1000 genomes] |
| rs2265193 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2265199 | 0.90[ASN][1000 genomes] |
| rs2771268 | 0.87[ASN][1000 genomes] |
| rs7084673 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7911784 | 0.88[ASN][1000 genomes] |
| rs7912223 | 0.88[ASN][1000 genomes] |
| rs913645 | 0.82[ASN][1000 genomes] |
| rs913647 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046258 | chr10:93866969-94466106 | Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
| 2 | nsv508600 | chr10:94115025-94231917 | Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv975013 | chr10:94137766-94200367 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:94162600-94164200 | Weak transcription | K562 | blood |
