Variant report

Variant	rs11186931
Chromosome Location	chr10:94103409-94103410
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94050172..94051872-chr10:94102299..94104272,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198060	Chromatin interaction
ENSG00000107864	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1057848	0.88[ASN][1000 genomes]
rs10786035	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882049	0.86[ASN][1000 genomes]
rs10882052	0.82[ASN][1000 genomes]
rs11186899	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186903	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11186910	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186912	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186923	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186926	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186932	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12358967	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1812851	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34761542	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61875240	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61875241	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61875243	0.87[ASN][1000 genomes]
rs7080813	0.86[ASN][1000 genomes]
rs7903767	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94052000-94111800	Weak transcription	Gastric	stomach
2	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
3	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
5	chr10:94052600-94109400	Weak transcription	HSMMtube	muscle
6	chr10:94053400-94109400	Weak transcription	Fetal Brain Male	brain
7	chr10:94063600-94109400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:94063600-94111800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr10:94064000-94109200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:94067000-94113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:94071800-94108200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:94072200-94109000	Weak transcription	Brain Anterior Caudate	brain
13	chr10:94072200-94109400	Weak transcription	Aorta	Aorta
14	chr10:94074000-94109200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:94078400-94106800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:94081000-94109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:94081000-94112800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr10:94081200-94105400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:94087800-94108200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:94087800-94109200	Weak transcription	Ovary	ovary
21	chr10:94088000-94112200	Weak transcription	K562	blood
22	chr10:94089000-94114600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94089800-94114000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:94090200-94109000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:94090600-94114800	Weak transcription	Small Intestine	intestine
26	chr10:94090800-94109200	Weak transcription	Hela-S3	cervix
27	chr10:94091200-94114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:94091400-94108400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:94093200-94108600	Weak transcription	Right Atrium	heart
30	chr10:94094000-94108600	Weak transcription	Psoas Muscle	Psoas
31	chr10:94095200-94112000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:94095400-94104400	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:94095400-94109200	Weak transcription	Colon Smooth Muscle	Colon
34	chr10:94095400-94112000	Weak transcription	Fetal Heart	heart
35	chr10:94098600-94108600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr10:94099200-94113400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:94099800-94104800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:94099800-94105000	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr10:94099800-94105600	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:94099800-94106200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:94100000-94104600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr10:94100000-94106600	Strong transcription	Primary T cells from cord blood	blood
43	chr10:94100000-94111400	Strong transcription	Primary B cells from peripheral blood	blood
44	chr10:94100000-94111400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:94100000-94112000	Strong transcription	Fetal Thymus	thymus
46	chr10:94100200-94103800	Strong transcription	Liver	Liver
47	chr10:94100200-94104800	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:94100200-94104800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:94100200-94106200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:94100200-94106800	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links