Variant report

Variant	rs11186899
Chromosome Location	chr10:94053124-94053125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94051163..94054027-chr10:94136887..94138401,2	K562	blood:
2	chr10:94051288..94054115-chr10:94056033..94058456,2	MCF-7	breast:
3	chr10:94051034..94053715-chr10:94061317..94064241,2	K562	blood:
4	chr10:94050937..94052594-chr10:94052946..94055735,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10786035	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882040	0.91[EUR][1000 genomes]
rs10882044	0.86[ASN][1000 genomes]
rs11186876	0.81[ASN][1000 genomes]
rs11186878	0.83[ASN][1000 genomes]
rs11186879	0.83[ASN][1000 genomes]
rs11186880	0.83[ASN][1000 genomes]
rs11186881	0.83[ASN][1000 genomes]
rs11186884	0.86[ASN][1000 genomes]
rs11186888	0.86[ASN][1000 genomes]
rs11186892	0.86[ASN][1000 genomes]
rs11186894	0.86[ASN][1000 genomes]
rs11186895	0.86[ASN][1000 genomes]
rs11186896	0.86[ASN][1000 genomes]
rs11186897	0.87[ASN][1000 genomes]
rs11186898	0.87[ASN][1000 genomes]
rs11186903	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186910	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186912	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11186923	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186926	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186931	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11186932	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12355759	0.86[ASN][1000 genomes]
rs12358721	0.83[ASN][1000 genomes]
rs12358765	0.86[ASN][1000 genomes]
rs12358967	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17107517	0.86[ASN][1000 genomes]
rs1812851	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34761542	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56239008	0.86[ASN][1000 genomes]
rs61875240	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61875241	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6583805	0.83[ASN][1000 genomes]
rs7088903	0.83[ASN][1000 genomes]
rs746842	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94049800-94054200	Active TSS	GM12878-XiMat	blood
2	chr10:94051600-94057600	Weak transcription	Spleen	Spleen
3	chr10:94052000-94111800	Weak transcription	Gastric	stomach
4	chr10:94052200-94053200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:94052200-94053400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr10:94052200-94054600	Weak transcription	Pancreas	Pancrea
7	chr10:94052200-94059600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr10:94052200-94065800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:94052200-94071000	Weak transcription	Fetal Intestine Large	intestine
10	chr10:94052200-94109400	Weak transcription	Esophagus	oesophagus
11	chr10:94052400-94053200	Enhancers	Brain Hippocampus Middle	brain
12	chr10:94052400-94053400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:94052400-94054200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:94052400-94054400	Weak transcription	Ovary	ovary
15	chr10:94052400-94054600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:94052400-94054800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:94052400-94056400	Weak transcription	Right Atrium	heart
18	chr10:94052400-94057000	Weak transcription	Lung	lung
19	chr10:94052400-94058400	Weak transcription	Left Ventricle	heart
20	chr10:94052400-94059000	Weak transcription	Primary B cells from cord blood	blood
21	chr10:94052400-94060200	Weak transcription	Aorta	Aorta
22	chr10:94052400-94062800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:94052400-94063200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:94052400-94063200	Weak transcription	Brain Anterior Caudate	brain
25	chr10:94052400-94070800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr10:94052400-94080600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:94052400-94101200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:94052400-94101600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:94052400-94108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr10:94052400-94114600	Weak transcription	Colonic Mucosa	Colon
31	chr10:94052600-94053200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr10:94052600-94053200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:94052600-94053200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
34	chr10:94052600-94053400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:94052600-94053400	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr10:94052600-94053400	Enhancers	Hela-S3	cervix
37	chr10:94052600-94053400	Weak transcription	HSMM	muscle
38	chr10:94052600-94053600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:94052600-94053600	Weak transcription	Fetal Heart	heart
40	chr10:94052600-94054800	Enhancers	HepG2	liver
41	chr10:94052600-94056200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:94052600-94058400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:94052600-94060400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr10:94052600-94060800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr10:94052600-94061800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr10:94052600-94062200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:94052600-94063200	Weak transcription	Brain Substantia Nigra	brain
48	chr10:94052600-94063600	Weak transcription	Brain Angular Gyrus	brain
49	chr10:94052600-94065200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:94052600-94068200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links