Variant report

Variant	esv10878
Chromosome Location	chr9:96433251-96435331
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96431258..96433932-chr9:96436519..96439062,2	MCF-7	breast:
2	chr9:96434785..96437496-chr9:96439550..96441266,2	K562	blood:
3	chr9:96434498..96437281-chr9:96438650..96440857,2	MCF-7	breast:
4	chr9:96434785..96437618-chr9:96438061..96441050,2	K562	blood:

Extended variants
information (count: 126 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:126 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182105360	chr9:96433286-96433287	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs80294194	chr9:96433292-96433293	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149908936	chr9:96433298-96433299	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs75894380	chr9:96433307-96433308	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577871717	chr9:96433312-96433313	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545234695	chr9:96433321-96433322	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112259060	chr9:96433342-96433343	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs77448876	chr9:96433343-96433344	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10821195	chr9:96433349-96433350	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs542734245	chr9:96433361-96433362	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs10821196	chr9:96433396-96433397	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs531351070	chr9:96433421-96433422	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10992845	chr9:96433430-96433431	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs565239285	chr9:96433446-96433447	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200383617	chr9:96433449-96433450	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs532525356	chr9:96433457-96433458	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs146464522	chr9:96433472-96433473	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs115677777	chr9:96433532-96433533	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530123704	chr9:96433540-96433541	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs186752955	chr9:96433542-96433543	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs13301391	chr9:96433543-96433544	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs140884734	chr9:96433544-96433545	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs557062303	chr9:96433553-96433554	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs537447569	chr9:96433558-96433559	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs68180235	chr9:96433565-96433566	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs59324530	chr9:96433567-96433568	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs369963660	chr9:96433573-96433574	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs112211571	chr9:96433655-96433656	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10821197	chr9:96433684-96433685	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs199540405	chr9:96433719-96433720	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs375452770	chr9:96433720-96433721	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs28715378	chr9:96433723-96433724	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs28530486	chr9:96433754-96433755	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs28729158	chr9:96433766-96433767	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs10992847	chr9:96433767-96433768	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376009986	chr9:96433773-96433774	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs556457131	chr9:96433804-96433805	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571557043	chr9:96433806-96433807	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10992848	chr9:96433826-96433827	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs10992849	chr9:96433838-96433839	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10992850	chr9:96433839-96433840	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs10992851	chr9:96433845-96433846	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs10992852	chr9:96433846-96433847	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377443036	chr9:96433859-96433860	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370255360	chr9:96433882-96433883	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs56390720	chr9:96433905-96433906	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs111802777	chr9:96433934-96433935	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs538982106	chr9:96433994-96433995	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368059058	chr9:96434061-96434062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs553662955	chr9:96434099-96434100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Mental retardation	21693067	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Microcephaly	18830227	CNVD
overgrowth syndrome	16570072	CNVD
Pancreatic cancer	17952125	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:195 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
2	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
4	chr9:96412600-96439400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
6	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96412800-96442800	Weak transcription	HMEC	breast
8	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
9	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
13	chr9:96414200-96434800	Weak transcription	Right Atrium	heart
14	chr9:96414400-96435800	Weak transcription	HSMM	muscle
15	chr9:96416400-96443400	Weak transcription	HepG2	liver
16	chr9:96417800-96439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:96419200-96440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:96420800-96435600	Weak transcription	A549	lung
19	chr9:96422000-96439800	Weak transcription	Osteobl	bone
20	chr9:96424600-96433400	Strong transcription	Ovary	ovary
21	chr9:96424800-96434000	Strong transcription	Pancreas	Pancrea
22	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:96426200-96434800	Weak transcription	Fetal Heart	heart
25	chr9:96426200-96434800	Weak transcription	Fetal Kidney	kidney
26	chr9:96426200-96435200	Weak transcription	Primary B cells from cord blood	blood
27	chr9:96426200-96435200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:96426200-96436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:96426200-96436200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:96426200-96438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:96426200-96438000	Weak transcription	HSMMtube	muscle
32	chr9:96426200-96438400	Weak transcription	Fetal Lung	lung
33	chr9:96426200-96438600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:96426400-96438800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:96426400-96439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:96426400-96439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:96426600-96435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:96426800-96435400	Weak transcription	Brain Substantia Nigra	brain
41	chr9:96428400-96438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:96428600-96435000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:96428600-96435200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:96428600-96435200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:96428800-96434800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:96428800-96435000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:96428800-96435200	Weak transcription	NHLF	lung
48	chr9:96428800-96436000	Weak transcription	Brain Anterior Caudate	brain
49	chr9:96429000-96435200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:96429000-96435200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links