Variant report

Variant	rs10821196
Chromosome Location	chr9:96433396-96433397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96431258..96433932-chr9:96436519..96439062,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10761245	0.83[CHB][hapmap]
rs10761247	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10761251	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761252	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761254	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761255	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10992836	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10992841	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10992854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11534279	0.83[CHB][hapmap]
rs11793637	0.82[CHB][hapmap]
rs12002044	0.84[CHB][hapmap]
rs1806458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2001589	0.83[CHB][hapmap]
rs2001994	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2398851	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2398853	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2398855	0.96[CHB][hapmap];0.83[JPT][hapmap]
rs2398856	0.83[CHB][hapmap]
rs2398861	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3750354	0.84[CHB][hapmap]
rs3750358	0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3750362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3763605	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743930	0.91[ASN][1000 genomes]
rs4743931	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs4744264	0.86[ASN][1000 genomes]
rs6479499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6479500	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6479501	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7019745	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028306	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7849752	0.87[CHB][hapmap]
rs7868191	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3357089	chr9:96431831-96436129	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1806172	chr9:96432418-96434806	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1846506	chr9:96432418-96434806	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3421237	chr9:96432531-96436629	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1821232	chr9:96432811-96434806	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1829826	chr9:96432811-96434806	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1793558	chr9:96433101-96434806	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv10878	chr9:96433251-96435331	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
2	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
4	chr9:96412600-96439400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
6	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:96412800-96442800	Weak transcription	HMEC	breast
8	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
9	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
13	chr9:96414200-96434800	Weak transcription	Right Atrium	heart
14	chr9:96414400-96435800	Weak transcription	HSMM	muscle
15	chr9:96416400-96443400	Weak transcription	HepG2	liver
16	chr9:96417800-96439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:96419200-96440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:96420800-96435600	Weak transcription	A549	lung
19	chr9:96422000-96439800	Weak transcription	Osteobl	bone
20	chr9:96424600-96433400	Strong transcription	Ovary	ovary
21	chr9:96424800-96434000	Strong transcription	Pancreas	Pancrea
22	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr9:96426200-96434800	Weak transcription	Fetal Heart	heart
25	chr9:96426200-96434800	Weak transcription	Fetal Kidney	kidney
26	chr9:96426200-96435200	Weak transcription	Primary B cells from cord blood	blood
27	chr9:96426200-96435200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr9:96426200-96436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:96426200-96436200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:96426200-96438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:96426200-96438000	Weak transcription	HSMMtube	muscle
32	chr9:96426200-96438400	Weak transcription	Fetal Lung	lung
33	chr9:96426200-96438600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr9:96426400-96438800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:96426400-96439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:96426400-96439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr9:96426600-96435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:96426800-96435400	Weak transcription	Brain Substantia Nigra	brain
41	chr9:96428400-96438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr9:96428600-96435000	Weak transcription	Rectal Smooth Muscle	rectum
43	chr9:96428600-96435200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:96428600-96435200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr9:96428800-96434800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:96428800-96435000	Weak transcription	Brain Angular Gyrus	brain
47	chr9:96428800-96435200	Weak transcription	NHLF	lung
48	chr9:96428800-96436000	Weak transcription	Brain Anterior Caudate	brain
49	chr9:96429000-96435200	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr9:96429000-96435200	Weak transcription	Rectal Mucosa Donor 29	rectum

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