Variant report

Variant	rs7868191
Chromosome Location	chr9:96404743-96404744
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96393648..96395801-chr9:96402500..96404793,2	MCF-7	breast:
2	chr9:96403393..96404983-chr9:96412253..96413930,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10761245	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10761246	0.93[ASN][1000 genomes]
rs10761247	0.86[CHB][hapmap]
rs10761249	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10761250	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs10821184	0.88[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10821185	0.95[CEU][hapmap];0.96[EUR][1000 genomes]
rs10821186	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10821187	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821188	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821189	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10821190	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821191	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821192	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs10821193	0.92[EUR][1000 genomes]
rs10821194	0.92[EUR][1000 genomes]
rs10821195	0.91[EUR][1000 genomes]
rs10821196	0.83[CHB][hapmap]
rs10821202	0.84[EUR][1000 genomes]
rs10821203	0.84[EUR][1000 genomes]
rs10992807	0.83[CHB][hapmap]
rs10992812	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs10992813	0.82[CEU][hapmap];0.93[EUR][1000 genomes]
rs10992815	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs10992819	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10992829	0.92[EUR][1000 genomes]
rs10992831	0.92[EUR][1000 genomes]
rs10992839	0.95[CEU][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs10992840	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs10992842	0.92[EUR][1000 genomes]
rs10992854	0.81[CHB][hapmap]
rs10992860	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs1132004	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1140722	0.86[EUR][1000 genomes]
rs11534279	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11793637	0.90[CHB][hapmap]
rs12002044	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs12238738	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs1806458	0.82[CHB][hapmap]
rs1806524	0.87[CEU][hapmap]
rs2001315	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2001589	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2001610	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs2398848	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs2398855	0.86[CHB][hapmap]
rs2398856	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34031628	0.84[EUR][1000 genomes]
rs34103739	0.91[EUR][1000 genomes]
rs35171420	0.92[EUR][1000 genomes]
rs36013568	0.84[EUR][1000 genomes]
rs3750354	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750357	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs3750358	0.82[CHB][hapmap]
rs3750359	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs3750362	0.82[CHB][hapmap]
rs3829758	0.91[EUR][1000 genomes]
rs4403473	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6479499	0.82[CHB][hapmap]
rs7024028	0.82[CHB][hapmap]
rs7036592	0.92[EUR][1000 genomes]
rs7040340	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7044244	0.95[CEU][hapmap];0.94[EUR][1000 genomes]
rs7849752	0.95[CHB][hapmap]
rs7851178	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7851271	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857266	0.82[CEU][hapmap]
rs7864397	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
3	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96390200-96405400	Weak transcription	HepG2	liver
5	chr9:96392200-96412000	Weak transcription	HMEC	breast
6	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr9:96393600-96406600	Weak transcription	GM12878-XiMat	blood
8	chr9:96396400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96397200-96407800	Weak transcription	NHEK	skin
10	chr9:96398200-96411200	Weak transcription	HUVEC	blood vessel
11	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:96399000-96423400	Strong transcription	Fetal Intestine Large	intestine
13	chr9:96399200-96406200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:96399400-96405400	Weak transcription	Esophagus	oesophagus
15	chr9:96399400-96423600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr9:96400000-96405400	Weak transcription	Right Ventricle	heart
17	chr9:96400000-96405400	Weak transcription	NHLF	lung
18	chr9:96400000-96405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:96400000-96405800	Weak transcription	Colonic Mucosa	Colon
20	chr9:96400200-96405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:96400200-96405400	Weak transcription	Gastric	stomach
22	chr9:96400200-96405400	Weak transcription	Spleen	Spleen
23	chr9:96400200-96405600	Weak transcription	Aorta	Aorta
24	chr9:96400200-96412000	Weak transcription	Hela-S3	cervix
25	chr9:96400400-96405000	Weak transcription	Fetal Thymus	thymus
26	chr9:96400400-96405200	Weak transcription	NH-A	brain
27	chr9:96400400-96405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:96400400-96405400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:96400400-96405400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:96400400-96405400	Weak transcription	Left Ventricle	heart
31	chr9:96400400-96405400	Weak transcription	Thymus	Thymus
32	chr9:96400400-96405600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:96400400-96406800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:96400400-96407200	Weak transcription	Brain Substantia Nigra	brain
35	chr9:96400400-96407200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr9:96400400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:96400400-96412000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:96400400-96430600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr9:96400600-96404800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr9:96400600-96405400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:96400600-96405400	Weak transcription	Dnd41	blood
42	chr9:96400600-96407600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:96400600-96411600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr9:96400600-96411800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr9:96400600-96412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr9:96400800-96404800	Weak transcription	NHDF-Ad	bronchial
47	chr9:96400800-96405400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr9:96400800-96405800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:96400800-96407600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:96400800-96411800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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