Variant report

Variant	rs10821203
Chromosome Location	chr9:96447466-96447467
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96445904..96447979-chr9:96722570..96724839,2	MCF-7	breast:
2	chr9:96447168..96447681-chr9:96724934..96725916,2	K562	blood:
3	chr9:96447351..96448048-chr9:96706007..96706581,3	MCF-7	breast:
4	chr9:96447198..96448012-chr9:96724180..96725782,4	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10761249	0.87[EUR][1000 genomes]
rs10761250	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821185	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821186	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10821187	0.84[EUR][1000 genomes]
rs10821188	0.84[EUR][1000 genomes]
rs10821189	0.84[EUR][1000 genomes]
rs10821190	0.88[EUR][1000 genomes]
rs10821191	0.88[EUR][1000 genomes]
rs10821192	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821193	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821194	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821195	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821202	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992812	0.82[EUR][1000 genomes]
rs10992813	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10992815	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992819	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992829	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992831	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992839	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992840	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10992842	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992860	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1132004	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1140722	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12238738	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2001315	0.84[EUR][1000 genomes]
rs2001589	0.84[EUR][1000 genomes]
rs2001610	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2398848	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2398856	0.84[EUR][1000 genomes]
rs34031628	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34103739	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35171420	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36013568	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3750354	0.88[EUR][1000 genomes]
rs3750357	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3750359	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3829758	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479504	0.86[EUR][1000 genomes]
rs7036592	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7040340	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7044244	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7851178	0.87[EUR][1000 genomes]
rs7851271	0.84[EUR][1000 genomes]
rs7864397	0.87[EUR][1000 genomes]
rs7868191	0.84[EUR][1000 genomes]
rs7871695	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:96442400-96447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:96442600-96447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
6	chr9:96446600-96448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96446800-96448200	Enhancers	HUVEC	blood vessel
8	chr9:96447000-96447600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:96447200-96448600	Enhancers	Stomach Smooth Muscle	stomach
10	chr9:96447400-96447600	Enhancers	Adipose Nuclei	Adipose
11	chr9:96447400-96447800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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