Variant report
| Variant | rs7871695 |
|---|---|
| Chromosome Location | chr9:96465331-96465332 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:96463023..96465693-chr9:96468979..96471782,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10761250 | 0.81[EUR][1000 genomes] |
| rs10821192 | 0.81[EUR][1000 genomes] |
| rs10821193 | 0.81[EUR][1000 genomes] |
| rs10821194 | 0.81[EUR][1000 genomes] |
| rs10821195 | 0.83[EUR][1000 genomes] |
| rs10821202 | 0.88[EUR][1000 genomes] |
| rs10821203 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10992829 | 0.81[EUR][1000 genomes] |
| rs10992831 | 0.81[EUR][1000 genomes] |
| rs10992839 | 0.81[EUR][1000 genomes] |
| rs10992840 | 0.81[EUR][1000 genomes] |
| rs10992842 | 0.82[EUR][1000 genomes] |
| rs10992860 | 0.89[EUR][1000 genomes] |
| rs1132004 | 0.87[EUR][1000 genomes] |
| rs1140722 | 0.87[EUR][1000 genomes] |
| rs12376819 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs34031628 | 0.89[EUR][1000 genomes] |
| rs34103739 | 0.83[EUR][1000 genomes] |
| rs35171420 | 0.81[EUR][1000 genomes] |
| rs36013568 | 0.89[EUR][1000 genomes] |
| rs3750357 | 0.81[EUR][1000 genomes] |
| rs3750359 | 0.81[EUR][1000 genomes] |
| rs3829758 | 0.83[EUR][1000 genomes] |
| rs7036592 | 0.81[EUR][1000 genomes] |
| rs7040340 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv893586 | chr9:96363859-96493773 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1036609 | chr9:96375217-96477641 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96464000-96469800 | Weak transcription | Right Atrium | heart |
