Variant report

Variant	rs10821202
Chromosome Location	chr9:96443165-96443166
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96442742..96446259-chr9:96719078..96722660,3	MCF-7	breast:
2	chr9:96443153..96443849-chr9:96725175..96725852,2	K562	blood:
3	chr9:96338337..96340643-chr9:96441518..96443236,3	MCF-7	breast:
4	chr9:96382332..96382997-chr9:96442806..96443414,2	MCF-7	breast:
5	chr9:96443001..96444886-chr9:96710905..96713769,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10761249	0.88[EUR][1000 genomes]
rs10761250	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821185	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821186	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821187	0.84[EUR][1000 genomes]
rs10821188	0.84[EUR][1000 genomes]
rs10821189	0.84[EUR][1000 genomes]
rs10821190	0.88[EUR][1000 genomes]
rs10821191	0.88[EUR][1000 genomes]
rs10821192	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821193	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821194	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821195	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821203	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10992812	0.83[EUR][1000 genomes]
rs10992813	0.85[EUR][1000 genomes]
rs10992815	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992819	0.87[EUR][1000 genomes]
rs10992829	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992831	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992839	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992840	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992860	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1132004	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1140722	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12238738	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2001315	0.83[EUR][1000 genomes]
rs2001589	0.83[EUR][1000 genomes]
rs2001610	0.86[EUR][1000 genomes]
rs2398848	0.86[EUR][1000 genomes]
rs2398856	0.84[EUR][1000 genomes]
rs34031628	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34103739	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35171420	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36013568	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750354	0.89[EUR][1000 genomes]
rs3750357	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3750359	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3829758	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479504	0.85[EUR][1000 genomes]
rs7036592	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7040340	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7044244	0.86[EUR][1000 genomes]
rs7851178	0.88[EUR][1000 genomes]
rs7851271	0.84[EUR][1000 genomes]
rs7864397	0.88[EUR][1000 genomes]
rs7868191	0.84[EUR][1000 genomes]
rs7871695	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
3	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:96416400-96443400	Weak transcription	HepG2	liver
5	chr9:96434600-96443200	Strong transcription	Fetal Stomach	stomach
6	chr9:96436600-96443800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:96437800-96444800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:96438800-96443800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:96439600-96443200	Weak transcription	Psoas Muscle	Psoas
11	chr9:96439600-96444800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:96439800-96444800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:96439800-96444800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:96440200-96444400	Weak transcription	A549	lung
15	chr9:96440400-96444000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:96440400-96444200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:96440400-96444400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:96440400-96444800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:96440600-96443400	Weak transcription	Small Intestine	intestine
20	chr9:96440600-96443800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:96440600-96444000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:96440600-96444400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:96440600-96444600	Weak transcription	Fetal Lung	lung
24	chr9:96440600-96444800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:96440800-96443200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:96440800-96443600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:96440800-96443600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:96440800-96443600	Weak transcription	Liver	Liver
30	chr9:96440800-96443600	Weak transcription	Gastric	stomach
31	chr9:96440800-96443800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:96440800-96443800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr9:96440800-96444000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:96440800-96444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:96440800-96444400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr9:96440800-96444400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:96440800-96444600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:96440800-96444800	Weak transcription	Left Ventricle	heart
39	chr9:96440800-96445600	Weak transcription	NHLF	lung
40	chr9:96440800-96447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:96441000-96443800	Weak transcription	Pancreas	Pancrea
42	chr9:96441000-96444000	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr9:96441000-96444000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:96441000-96444000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:96441000-96444200	Weak transcription	Esophagus	oesophagus
46	chr9:96441000-96444400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr9:96441000-96446400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:96441000-96447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:96441400-96443200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:96441400-96443800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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