Variant report

Variant	rs10821187
Chromosome Location	chr9:96406858-96406859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96405435..96406996-chr9:96417472..96420268,2	MCF-7	breast:
2	chr9:96405323..96407093-chr9:96410616..96412899,2	K562	blood:
3	chr9:96405323..96407583-chr9:96410616..96412899,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10761245	0.91[ASN][1000 genomes]
rs10761246	0.91[ASN][1000 genomes]
rs10761249	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761250	0.92[EUR][1000 genomes]
rs10821184	0.91[ASN][1000 genomes]
rs10821185	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10821186	0.96[EUR][1000 genomes]
rs10821188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821189	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10821190	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821191	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10821192	0.92[EUR][1000 genomes]
rs10821193	0.92[EUR][1000 genomes]
rs10821194	0.92[EUR][1000 genomes]
rs10821195	0.91[EUR][1000 genomes]
rs10821202	0.84[EUR][1000 genomes]
rs10821203	0.84[EUR][1000 genomes]
rs10992812	0.91[EUR][1000 genomes]
rs10992813	0.93[EUR][1000 genomes]
rs10992815	0.95[EUR][1000 genomes]
rs10992819	0.95[EUR][1000 genomes]
rs10992829	0.92[EUR][1000 genomes]
rs10992831	0.92[EUR][1000 genomes]
rs10992839	0.92[EUR][1000 genomes]
rs10992840	0.92[EUR][1000 genomes]
rs10992842	0.92[EUR][1000 genomes]
rs10992860	0.85[EUR][1000 genomes]
rs1132004	0.86[EUR][1000 genomes]
rs1140722	0.86[EUR][1000 genomes]
rs11534279	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12002044	0.91[ASN][1000 genomes]
rs12238738	0.95[EUR][1000 genomes]
rs2001315	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2001589	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2001610	0.94[EUR][1000 genomes]
rs2398848	0.94[EUR][1000 genomes]
rs2398856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34031628	0.84[EUR][1000 genomes]
rs34103739	0.91[EUR][1000 genomes]
rs35171420	0.92[EUR][1000 genomes]
rs36013568	0.84[EUR][1000 genomes]
rs3750354	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750357	0.92[EUR][1000 genomes]
rs3750359	0.92[EUR][1000 genomes]
rs3829758	0.91[EUR][1000 genomes]
rs7036592	0.92[EUR][1000 genomes]
rs7040340	0.84[EUR][1000 genomes]
rs7044244	0.94[EUR][1000 genomes]
rs7851178	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7851271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7864397	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7868191	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
3	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96392200-96412000	Weak transcription	HMEC	breast
5	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:96396400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:96397200-96407800	Weak transcription	NHEK	skin
8	chr9:96398200-96411200	Weak transcription	HUVEC	blood vessel
9	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:96399000-96423400	Strong transcription	Fetal Intestine Large	intestine
11	chr9:96399400-96423600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr9:96400200-96412000	Weak transcription	Hela-S3	cervix
13	chr9:96400400-96407200	Weak transcription	Brain Substantia Nigra	brain
14	chr9:96400400-96407200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:96400400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:96400400-96412000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:96400400-96430600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:96400600-96407600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:96400600-96411600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:96400600-96411800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:96400600-96412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:96400800-96407600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:96400800-96411800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:96400800-96411800	Weak transcription	Fetal Brain Male	brain
25	chr9:96400800-96411800	Weak transcription	K562	blood
26	chr9:96401000-96409000	Weak transcription	Primary B cells from cord blood	blood
27	chr9:96401000-96411800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:96401000-96411800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:96401000-96411800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:96401000-96411800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:96401000-96412000	Weak transcription	A549	lung
32	chr9:96401000-96430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
34	chr9:96401600-96423400	Strong transcription	Adipose Nuclei	Adipose
35	chr9:96401800-96411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr9:96401800-96423400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr9:96402200-96411600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:96402400-96411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:96402400-96411800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr9:96402600-96407600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr9:96402600-96430200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr9:96402800-96411800	Weak transcription	Fetal Kidney	kidney
44	chr9:96403200-96412000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:96403200-96423000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr9:96403400-96430800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:96403400-96430800	Strong transcription	Liver	Liver
48	chr9:96403600-96409200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr9:96403800-96412600	Strong transcription	Placenta	Placenta
50	chr9:96404200-96409600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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