Variant report

Variant	rs34103739
Chromosome Location	chr9:96435650-96435651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96434498..96437281-chr9:96438650..96440857,2	MCF-7	breast:
2	chr9:96434785..96437496-chr9:96439550..96441266,2	K562	blood:
3	chr9:96434785..96437618-chr9:96438061..96441050,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10122270	0.85[ASN][1000 genomes]
rs10761249	0.94[EUR][1000 genomes]
rs10761250	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821185	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10821186	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10821187	0.91[EUR][1000 genomes]
rs10821188	0.91[EUR][1000 genomes]
rs10821189	0.91[EUR][1000 genomes]
rs10821190	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10821191	0.95[EUR][1000 genomes]
rs10821192	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821193	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821194	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821195	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821202	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821203	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10992812	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992813	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10992815	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992819	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10992829	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992831	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992839	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992840	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10992842	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992860	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1132004	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1140722	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11534279	0.82[EUR][1000 genomes]
rs12238738	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1806524	0.81[AMR][1000 genomes]
rs2001315	0.90[EUR][1000 genomes]
rs2001589	0.90[EUR][1000 genomes]
rs2001610	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2398848	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2398856	0.91[EUR][1000 genomes]
rs34031628	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35171420	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36013568	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3750354	0.95[EUR][1000 genomes]
rs3750357	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3750359	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3829758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036592	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040340	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7044244	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7851178	0.94[EUR][1000 genomes]
rs7851271	0.91[EUR][1000 genomes]
rs7864397	0.94[EUR][1000 genomes]
rs7865712	0.84[ASN][1000 genomes]
rs7868191	0.91[EUR][1000 genomes]
rs7871695	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3357089	chr9:96431831-96436129	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3421237	chr9:96432531-96436629	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
2	chr9:96406200-96438600	Weak transcription	Small Intestine	intestine
3	chr9:96412600-96439400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:96412600-96442800	Weak transcription	NHDF-Ad	bronchial
5	chr9:96412600-96445000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:96412800-96442800	Weak transcription	HMEC	breast
7	chr9:96412800-96443600	Weak transcription	Stomach Mucosa	stomach
8	chr9:96413000-96442000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96413000-96444800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96413200-96440800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:96413400-96441600	Weak transcription	GM12878-XiMat	blood
12	chr9:96414400-96435800	Weak transcription	HSMM	muscle
13	chr9:96416400-96443400	Weak transcription	HepG2	liver
14	chr9:96417800-96439000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr9:96419200-96440000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:96422000-96439800	Weak transcription	Osteobl	bone
17	chr9:96424800-96440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:96426000-96441800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:96426200-96436000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:96426200-96436200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:96426200-96438000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:96426200-96438000	Weak transcription	HSMMtube	muscle
23	chr9:96426200-96438400	Weak transcription	Fetal Lung	lung
24	chr9:96426200-96438600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr9:96426200-96442200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:96426400-96438800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:96426400-96439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:96426400-96439800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:96426400-96441600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr9:96428400-96438600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:96428800-96436000	Weak transcription	Brain Anterior Caudate	brain
32	chr9:96429000-96435800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr9:96429600-96436000	Weak transcription	Aorta	Aorta
34	chr9:96430000-96436000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:96430000-96436600	Weak transcription	Colon Smooth Muscle	Colon
36	chr9:96430000-96438000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr9:96430200-96436600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr9:96430200-96436600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr9:96430600-96436000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:96431400-96440000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:96431400-96441800	Weak transcription	K562	blood
42	chr9:96431600-96436000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:96431800-96436000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr9:96433800-96436800	Weak transcription	NHEK	skin
45	chr9:96434200-96441000	Strong transcription	Pancreas	Pancrea
46	chr9:96434600-96435800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:96434600-96435800	Genic enhancers	Spleen	Spleen
48	chr9:96434600-96436200	Enhancers	Left Ventricle	heart
49	chr9:96434600-96436800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:96434600-96441000	Strong transcription	Esophagus	oesophagus

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