Variant report

Variant	rs10122270
Chromosome Location	chr9:96390131-96390132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96382620..96384260-chr9:96389901..96392114,2	MCF-7	breast:
2	chr9:96389762..96391845-chr9:96392211..96394395,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10761245	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10761246	0.97[EUR][1000 genomes]
rs10761250	0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs10821184	1.00[CEU][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10821185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10821186	0.90[ASN][1000 genomes]
rs10821192	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10821193	0.85[ASN][1000 genomes]
rs10821194	0.85[ASN][1000 genomes]
rs10821195	0.85[ASN][1000 genomes]
rs10992812	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10992813	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10992815	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs10992819	0.90[ASN][1000 genomes]
rs10992829	0.85[ASN][1000 genomes]
rs10992831	0.85[ASN][1000 genomes]
rs10992839	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs10992840	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs10992842	0.83[ASN][1000 genomes]
rs10992860	0.84[JPT][hapmap]
rs1132004	0.90[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs12002044	1.00[CEU][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12238738	1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs1806524	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2001368	0.90[YRI][hapmap]
rs2001610	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2398848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs34103739	0.85[ASN][1000 genomes]
rs35171420	0.84[ASN][1000 genomes]
rs3750357	1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs3750359	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs3829758	0.85[ASN][1000 genomes]
rs7036592	0.85[ASN][1000 genomes]
rs7040340	0.89[JPT][hapmap]
rs7044244	1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs7865712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv519449	chr9:96382100-96395429	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:96374600-96399800	Weak transcription	K562	blood
4	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
5	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:96379800-96391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:96380800-96399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:96382800-96391600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:96384000-96396400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:96384400-96391800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr9:96384600-96393600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
14	chr9:96384800-96391600	Weak transcription	Gastric	stomach
15	chr9:96385000-96390200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:96385400-96392000	Weak transcription	Pancreas	Pancrea
17	chr9:96385800-96392200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:96386400-96392200	Weak transcription	Ovary	ovary
19	chr9:96386600-96392200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:96386800-96391800	Weak transcription	Right Ventricle	heart
21	chr9:96386800-96392000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr9:96387200-96392400	Weak transcription	Left Ventricle	heart
24	chr9:96387200-96399800	Weak transcription	Fetal Heart	heart
25	chr9:96387600-96399600	Weak transcription	Fetal Kidney	kidney
26	chr9:96389200-96390800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr9:96389600-96390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:96389800-96390600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr9:96389800-96390600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
30	chr9:96390000-96390200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr9:96390000-96390400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr9:96390000-96390400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:96390000-96390400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:96390000-96390400	ZNF genes & repeats	Aorta	Aorta
35	chr9:96390000-96390400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
36	chr9:96390000-96390400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
37	chr9:96390000-96390400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
38	chr9:96390000-96390400	ZNF genes & repeats	Thymus	Thymus
39	chr9:96390000-96390400	ZNF genes & repeats	Spleen	Spleen
40	chr9:96390000-96390600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr9:96390000-96390600	ZNF genes & repeats	Primary T cells from cord blood	blood
42	chr9:96390000-96390600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
43	chr9:96390000-96390600	ZNF genes & repeats	Dnd41	blood
44	chr9:96390000-96390800	ZNF genes & repeats	Primary B cells from cord blood	blood
45	chr9:96390000-96390800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr9:96390000-96390800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
47	chr9:96390000-96390800	ZNF genes & repeats	Fetal Intestine Large	intestine
48	chr9:96390000-96391000	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr9:96390000-96391000	ZNF genes & repeats	Fetal Stomach	stomach

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