Variant report

Variant	rs34031628
Chromosome Location	chr9:96445432-96445433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96442742..96446259-chr9:96719078..96722660,3	MCF-7	breast:
2	chr9:96444762..96447288-chr9:96447833..96449686,2	MCF-7	breast:
3	chr9:96443766..96445914-chr9:96765340..96767005,2	MCF-7	breast:
4	chr9:96444176..96445839-chr9:96582616..96583550,7	MCF-7	breast:
5	chr9:96443546..96446066-chr9:96715342..96717948,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235601	Chromatin interaction
ENSG00000131668	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10761249	0.88[EUR][1000 genomes]
rs10761250	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821185	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821186	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10821187	0.84[EUR][1000 genomes]
rs10821188	0.84[EUR][1000 genomes]
rs10821189	0.84[EUR][1000 genomes]
rs10821190	0.88[EUR][1000 genomes]
rs10821191	0.88[EUR][1000 genomes]
rs10821192	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10821193	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821194	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10821195	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10821202	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10821203	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10992812	0.83[EUR][1000 genomes]
rs10992813	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10992815	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992819	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10992829	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992831	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992839	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992840	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992842	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10992860	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1132004	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1140722	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12238738	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2001315	0.84[EUR][1000 genomes]
rs2001589	0.84[EUR][1000 genomes]
rs2001610	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2398848	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2398856	0.84[EUR][1000 genomes]
rs34103739	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35171420	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36013568	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750354	0.89[EUR][1000 genomes]
rs3750357	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3750359	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3829758	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6479504	0.85[EUR][1000 genomes]
rs7036592	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7040340	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7044244	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7851178	0.88[EUR][1000 genomes]
rs7851271	0.84[EUR][1000 genomes]
rs7864397	0.88[EUR][1000 genomes]
rs7868191	0.84[EUR][1000 genomes]
rs7871695	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:96440800-96445600	Weak transcription	NHLF	lung
4	chr9:96440800-96447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:96441000-96446400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:96441000-96447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:96442200-96446200	Weak transcription	Lung	lung
8	chr9:96442400-96446200	Weak transcription	Thymus	Thymus
9	chr9:96442400-96447400	Weak transcription	Adipose Nuclei	Adipose
10	chr9:96442400-96447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:96442600-96447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:96444000-96445600	Enhancers	Placenta	Placenta
14	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
15	chr9:96444800-96446000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:96445400-96446600	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links