Variant report

Variant	rs6479504
Chromosome Location	chr9:96448738-96448739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10761249	0.93[CEU][hapmap]
rs10761250	0.93[CEU][hapmap]
rs10821185	0.88[CEU][hapmap]
rs10821191	0.92[CEU][hapmap]
rs10821192	0.89[CEU][hapmap]
rs10821202	0.85[EUR][1000 genomes]
rs10821203	0.86[EUR][1000 genomes]
rs10992812	0.81[CEU][hapmap]
rs10992815	0.89[CEU][hapmap]
rs10992839	0.92[CEU][hapmap]
rs10992840	0.93[CEU][hapmap]
rs10992860	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs1132004	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1140722	0.83[EUR][1000 genomes]
rs11534279	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12238738	0.89[CEU][hapmap]
rs1806524	0.86[CEU][hapmap]
rs2001589	0.92[CEU][hapmap]
rs2001610	0.92[CEU][hapmap]
rs2398848	0.92[CEU][hapmap]
rs2398856	0.96[CEU][hapmap]
rs34031628	0.85[EUR][1000 genomes]
rs36013568	0.85[EUR][1000 genomes]
rs3750354	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs3750357	0.93[CEU][hapmap]
rs3750359	0.89[CEU][hapmap]
rs7040340	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs7044244	0.93[CEU][hapmap]
rs7851178	0.92[CEU][hapmap]
rs7864397	0.92[CEU][hapmap]
rs7868191	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
3	chr9:96448600-96448800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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