Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:96445904..96447979-chr9:96722570..96724839,2	MCF-7	breast:
2	chr9:96442742..96446259-chr9:96719078..96722660,3	MCF-7	breast:
3	chr9:96444762..96447288-chr9:96447833..96449686,2	MCF-7	breast:
4	chr9:96443546..96446066-chr9:96715342..96717948,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000235601	Chromatin interaction
ENSG00000131668	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10761247	0.89[CHB][hapmap]
rs10761254	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs10761256	0.95[EUR][1000 genomes]
rs10821196	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs10992807	0.90[CHB][hapmap]
rs10992854	0.89[CHB][hapmap]
rs10992867	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10992880	0.85[AMR][1000 genomes]
rs12553508	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683791	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806458	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs2001994	0.80[CEU][hapmap];0.90[CHB][hapmap]
rs2398855	0.90[CHB][hapmap]
rs2398861	0.83[EUR][1000 genomes]
rs2398869	0.83[AMR][1000 genomes]
rs2398871	0.81[AMR][1000 genomes]
rs3750358	0.90[CEU][hapmap];0.89[CHB][hapmap]
rs3750362	0.89[CHB][hapmap]
rs4743930	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4744264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4744270	0.85[AMR][1000 genomes]
rs4744271	0.84[AMR][1000 genomes]
rs4744275	0.82[AMR][1000 genomes]
rs6479499	0.89[CHB][hapmap]
rs7023781	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7024028	0.89[CHB][hapmap]
rs9650755	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96436800-96447000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:96440600-96447600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:96440800-96447400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:96441000-96446400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr9:96441000-96447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:96442200-96446200	Weak transcription	Lung	lung
7	chr9:96442400-96446200	Weak transcription	Thymus	Thymus
8	chr9:96442400-96447400	Weak transcription	Adipose Nuclei	Adipose
9	chr9:96442400-96447600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:96442600-96447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr9:96442800-96449200	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:96444200-96449400	Enhancers	Fetal Stomach	stomach
13	chr9:96445400-96446600	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:96446000-96446200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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