Variant report

Variant	rs10992867
Chromosome Location	chr9:96461013-96461014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96460922..96462912-chr9:96670944..96672850,2	K562	blood:
2	chr9:96454186..96456317-chr9:96458810..96461776,2	K562	blood:
3	chr9:96454440..96457217-chr9:96460283..96462558,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10119231	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10761256	0.82[EUR][1000 genomes]
rs10761257	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821196	0.87[CEU][hapmap]
rs10992807	0.86[CEU][hapmap]
rs10992854	0.86[CEU][hapmap]
rs10992880	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553508	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12683791	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806458	0.87[CEU][hapmap]
rs2001994	0.87[CEU][hapmap]
rs2398861	0.88[EUR][1000 genomes]
rs2398869	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2398871	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3750362	0.86[CEU][hapmap]
rs4743930	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743931	0.89[CEU][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744264	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744270	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744271	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744275	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6479499	0.86[CEU][hapmap]
rs7023781	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7024028	0.86[CEU][hapmap]
rs7045925	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9650755	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96460600-96461400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:96461000-96461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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