Variant report

Variant	esv11707
Chromosome Location	chr10:1668101-1668606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11270468	chr10:1668103-1668104	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532344963	chr10:1668145-1668146	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541122916	chr10:1668162-1668163	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145269078	chr10:1668180-1668181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs553166278	chr10:1668194-1668195	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs115569484	chr10:1668200-1668201	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs56290402	chr10:1668203-1668204	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs56347194	chr10:1668209-1668210	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs56091507	chr10:1668214-1668215	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs9665478	chr10:1668215-1668216	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs55775093	chr10:1668220-1668221	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs116814367	chr10:1668243-1668244	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs4350291	chr10:1668244-1668245	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs369773045	chr10:1668248-1668249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs55719800	chr10:1668259-1668260	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs56377430	chr10:1668268-1668269	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs55653337	chr10:1668277-1668278	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs56013277	chr10:1668283-1668284	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs575238633	chr10:1668292-1668293	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs56241860	chr10:1668307-1668308	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs56074415	chr10:1668311-1668312	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs71929774	chr10:1668318-1668319	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs58817762	chr10:1668319-1668320	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs11250673	chr10:1668322-1668323	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs11250674	chr10:1668331-1668332	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs55857614	chr10:1668336-1668337	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs11250675	chr10:1668370-1668371	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs537438364	chr10:1668373-1668374	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs554675278	chr10:1668374-1668375	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs112221734	chr10:1668395-1668396	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs574431243	chr10:1668398-1668399	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs7922910	chr10:1668399-1668400	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs56134782	chr10:1668433-1668434	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs11250676	chr10:1668448-1668449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs377363255	chr10:1668453-1668454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs4393237	chr10:1668457-1668458	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs11250677	chr10:1668458-1668459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs560410905	chr10:1668459-1668460	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs577065246	chr10:1668495-1668496	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs546127566	chr10:1668497-1668498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs562629944	chr10:1668510-1668511	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs59995219	chr10:1668511-1668512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs71199942	chr10:1668520-1668521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs4406752	chr10:1668521-1668522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs12573205	chr10:1668525-1668526	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs561300996	chr10:1668534-1668535	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs376859559	chr10:1668558-1668559	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs60950370	chr10:1668559-1668560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs4393239	chr10:1668562-1668563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs12265319	chr10:1668573-1668574	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1651800-1671200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:1659200-1671800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:1663400-1670600	Weak transcription	Right Atrium	heart
4	chr10:1668000-1668200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:1668000-1668200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:1668200-1668400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:1668200-1671000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:1668400-1668800	Enhancers	Spleen	Spleen
9	chr10:1668400-1670000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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