Variant report

Variant	esv13966
Chromosome Location	chr19:24603100-24631644
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 608 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:608 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs193293622	chr19:24603104-24603105	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs563482494	chr19:24603107-24603108	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531722959	chr19:24603108-24603109	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141849152	chr19:24603109-24603110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs142400061	chr19:24603110-24603111	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs146298821	chr19:24603119-24603120	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs558711087	chr19:24603120-24603121	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185106166	chr19:24603127-24603128	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188769022	chr19:24603129-24603130	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs149911262	chr19:24603134-24603135	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141861610	chr19:24603138-24603139	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138902112	chr19:24603139-24603140	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144587629	chr19:24603144-24603145	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140451312	chr19:24603147-24603148	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs149215621	chr19:24603149-24603150	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs140953079	chr19:24603150-24603151	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558416148	chr19:24603151-24603152	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs576617756	chr19:24603152-24603153	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138110228	chr19:24603154-24603155	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537749924	chr19:24603162-24603163	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs141650804	chr19:24603164-24603165	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs139666761	chr19:24603165-24603166	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs113250719	chr19:24603170-24603171	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs151236279	chr19:24603177-24603178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146980785	chr19:24603179-24603180	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142265922	chr19:24603182-24603183	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs145717735	chr19:24603185-24603186	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs554913108	chr19:24603187-24603188	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573319423	chr19:24603188-24603189	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs540711191	chr19:24603192-24603193	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs559052507	chr19:24603205-24603206	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs577767299	chr19:24603208-24603209	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs80139729	chr19:24603213-24603214	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs79098519	chr19:24603215-24603216	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554718087	chr19:24603218-24603219	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376362611	chr19:24603219-24603220	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs370809639	chr19:24603220-24603221	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549321746	chr19:24603224-24603225	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs562045289	chr19:24603228-24603229	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs56197050	chr19:24603232-24603233	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs148629558	chr19:24603239-24603240	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs192604415	chr19:24603240-24603241	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs551633727	chr19:24603242-24603243	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs570250510	chr19:24603251-24603252	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs11671590	chr19:24603255-24603256	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555676229	chr19:24603258-24603259	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566902511	chr19:24603263-24603264	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184026591	chr19:24603268-24603269	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs112188234	chr19:24603280-24603281	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs553022807	chr19:24603297-24603298	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24594200-24603400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr19:24597600-24603400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr19:24601600-24608400	Weak transcription	NH-A	brain
4	chr19:24602000-24603400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr19:24615200-24617400	Weak transcription	NH-A	brain
6	chr19:24617400-24617800	ZNF genes & repeats	NH-A	brain
7	chr19:24617800-24619000	Weak transcription	NH-A	brain

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