Variant report

Variant	rs56197050
Chromosome Location	chr19:24603232-24603233
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1609034	1.00[ASN][1000 genomes]
rs2195427	1.00[ASN][1000 genomes]
rs2216587	1.00[ASN][1000 genomes]
rs2864521	1.00[ASN][1000 genomes]
rs4597447	1.00[ASN][1000 genomes]
rs4622641	1.00[ASN][1000 genomes]
rs4633855	0.82[AMR][1000 genomes]
rs4633856	1.00[ASN][1000 genomes]
rs55655466	0.82[AMR][1000 genomes]
rs55683349	0.85[AMR][1000 genomes]
rs55702237	1.00[ASN][1000 genomes]
rs55711828	1.00[ASN][1000 genomes]
rs55893876	1.00[ASN][1000 genomes]
rs55921836	1.00[ASN][1000 genomes]
rs55924136	1.00[ASN][1000 genomes]
rs55958918	0.82[AMR][1000 genomes]
rs56029289	1.00[ASN][1000 genomes]
rs56043672	0.82[AMR][1000 genomes]
rs56135701	1.00[ASN][1000 genomes]
rs56142462	0.83[ASN][1000 genomes]
rs56180951	1.00[ASN][1000 genomes]
rs56184309	0.82[AMR][1000 genomes]
rs56258324	1.00[ASN][1000 genomes]
rs56387159	1.00[ASN][1000 genomes]
rs8187076	1.00[ASN][1000 genomes]
rs8187229	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579078	chr19:24209547-24631604	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv469593	chr19:24424843-24622723	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv482822	chr19:24424843-24622723	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3337800	chr19:24474629-24603549	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
5	nsv911490	chr19:24482072-24610794	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv3347259	chr19:24525922-24603547	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	esv3329363	chr19:24526154-24605481	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv14008	chr19:24551540-24631644	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
9	esv1823421	chr19:24552161-24631604	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
10	nsv579108	chr19:24572619-24631604	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv579109	chr19:24574031-24614321	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3388688	chr19:24575528-24606532	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
13	esv3343170	chr19:24587013-24603813	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3430801	chr19:24587013-24606709	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a
15	esv3432635	chr19:24587013-24609605	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
16	esv3353915	chr19:24587013-24615397	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
17	esv3336749	chr19:24590412-24631782	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
18	esv3400525	chr19:24590412-24631782	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv3440201	chr19:24590412-24631782	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv3442010	chr19:24590412-24631782	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv3348257	chr19:24590712-24631782	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv3394359	chr19:24590712-24631782	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
23	nsv579110	chr19:24593777-24618241	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
24	nsv579111	chr19:24595576-24623298	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
25	nsv579112	chr19:24595576-24631604	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
26	nsv579113	chr19:24601680-24623298	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv13966	chr19:24603100-24631644	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
28	esv3380777	chr19:24603104-24605387	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24594200-24603400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr19:24597600-24603400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr19:24601600-24608400	Weak transcription	NH-A	brain
4	chr19:24602000-24603400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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