Variant report

Variant	esv1791882
Chromosome Location	chr11:76900813-76906057
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76837216..76837771-chr11:76902744..76903254,2	MCF-7	breast:
2	chr11:76901170..76903314-chr11:77259087..77261522,2	MCF-7	breast:
3	chr11:76756751..76757686-chr11:76902736..76903367,3	MCF-7	breast:
4	chr11:76902845..76903814-chr11:77330359..77331131,2	MCF-7	breast:
5	chr11:76902791..76903778-chr11:77258737..77260363,14	MCF-7	breast:
6	chr11:76835516..76838692-chr11:76899720..76903376,3	MCF-7	breast:
7	chr11:76901603..76903612-chr11:76907074..76909013,2	K562	blood:
8	chr11:76902860..76903731-chr11:77235331..77236081,3	MCF-7	breast:
9	chr11:76837985..76839166-chr11:76902702..76903643,5	K562	blood:
10	chr11:76902781..76903688-chr11:77081021..77082089,5	MCF-7	breast:
11	chr11:76901800..76904027-chr11:77298783..77300926,2	MCF-7	breast:
12	chr11:76902890..76903607-chr6:126462830..126463392,2	MCF-7	breast:
13	chr11:76902845..76903392-chr20:43245725..43246226,2	MCF-7	breast:
14	chr11:76902832..76903846-chr11:77329105..77330263,3	MCF-7	breast:
15	chr11:76837378..76839698-chr11:76898309..76901190,60	MCF-7	breast:
16	chr11:76852088..76855016-chr11:76900952..76903015,2	K562	blood:
17	chr11:76903026..76903577-chr7:140941694..140942203,2	MCF-7	breast:
18	chr11:76903113..76903726-chr11:77330410..77331563,4	MCF-7	breast:
19	chr11:76839097..76839757-chr11:76902558..76903329,2	MCF-7	breast:
20	chr11:76902666..76903427-chr16:710416..711340,2	MCF-7	breast:
21	chr11:76837868..76839145-chr11:76902463..76903746,12	MCF-7	breast:
22	chr11:76902551..76903698-chr11:77268194..77269571,9	MCF-7	breast:
23	chr11:76901668..76903583-chr11:76913584..76915149,2	MCF-7	breast:
24	chr11:76901897..76903673-chr11:77346667..77349389,2	MCF-7	breast:
25	chr11:76902892..76903670-chr11:77268742..77269476,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000161996	chromatin interactions
ENSG00000074201	chromatin interactions
ENSG00000137474	chromatin interactions
ENSG00000178301	chromatin interactions

Extended variants
information (count: 323 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:323 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576398184	chr11:76900824-76900825	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs545517132	chr11:76900890-76900891	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs562275801	chr11:76900975-76900976	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs531423762	chr11:76901000-76901001	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs548128867	chr11:76901015-76901016	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs561872459	chr11:76901047-76901048	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs372642675	chr11:76901072-76901073	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs374197589	chr11:76901076-76901077	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs111033195	chr11:76901086-76901087	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs34864003	chr11:76901097-76901098	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs368705036	chr11:76901123-76901124	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs397516303	chr11:76901130-76901131	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs77299211	chr11:76901136-76901137	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs371374104	chr11:76901152-76901153	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs111033178	chr11:76901153-76901154	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs397516304	chr11:76901162-76901163	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs569293775	chr11:76901179-76901180	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs111033391	chr11:76901189-76901190	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs397516305	chr11:76901191-76901192	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs111033252	chr11:76901193-76901194	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs534241957	chr11:76901199-76901200	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs554018323	chr11:76901200-76901201	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs577104822	chr11:76901204-76901205	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545432609	chr11:76901205-76901206	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs188000270	chr11:76901211-76901212	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs376786075	chr11:76901224-76901225	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs367905892	chr11:76901229-76901230	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs541868065	chr11:76901240-76901241	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs561748566	chr11:76901241-76901242	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs146266316	chr11:76901265-76901266	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs2276286	chr11:76901273-76901274	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs564407813	chr11:76901285-76901286	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs139460163	chr11:76901397-76901398	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs552650205	chr11:76901398-76901399	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs573320886	chr11:76901429-76901430	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs531724050	chr11:76901460-76901461	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs534425525	chr11:76901469-76901470	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs369329195	chr11:76901489-76901490	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs568584887	chr11:76901533-76901534	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs534153494	chr11:76901544-76901545	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs553935011	chr11:76901556-76901557	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs555848671	chr11:76901571-76901572	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs149348459	chr11:76901590-76901591	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs143777548	chr11:76901609-76901610	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs55637648	chr11:76901623-76901624	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs35298297	chr11:76901624-76901625	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs113932275	chr11:76901636-76901637	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs539695445	chr11:76901645-76901646	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs7947922	chr11:76901648-76901649	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs371677505	chr11:76901708-76901709	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21509527	CNVD
Breast cancer	17001317	CNVD
Oral squamous cell carcinoma	16619035	CNVD
Intracranial aneurysm	16715129	CNVD
Hepatocellular carcinoma	16750200	CNVD
Colorectal cancer	16272173	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Colorectal cancer	16882699	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668395	CNVD
Spinal muscular atrophy	17668395	CNVD
Neonatal seizures	17668395	CNVD
Neonatal seizures	17668391	CNVD
Neuroticism	17667963	CNVD
Cancer	17916600	CNVD
Squamous cell cancer	19047905	CNVD
Multiple endocrine neoplasia type 1	19566914	CNVD
XY sex reversal	17503084	CNVD
Berardinelli-seip congenital generalized lipodystrophy	17668391	CNVD
Maculopathy	17646752	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Breast cancer	16620391	CNVD
Neuroblastoma	18923191	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Usher syndrome	18421352	CNVD
Ovarian cancer	21240255	CNVD
Ovarian cancer	22355333	CNVD
Breast cancer	20932292	CNVD
Cancer	20164920	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD

Chromatin state (count:181 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:76890800-76918400	Weak transcription	Ovary	ovary
5	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76893800-76903800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:76894000-76901600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:76894400-76903800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76894400-76903800	Weak transcription	Gastric	stomach
10	chr11:76894600-76902600	Weak transcription	Pancreas	Pancrea
11	chr11:76895600-76903800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76898400-76901200	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:76899200-76901000	Enhancers	Fetal Muscle Leg	muscle
14	chr11:76899600-76903800	Weak transcription	HepG2	liver
15	chr11:76899800-76901200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:76899800-76902600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:76899800-76928200	Strong transcription	Liver	Liver
18	chr11:76900000-76901400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:76900000-76902000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:76900200-76903800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:76900400-76901600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:76900400-76902000	Genic enhancers	Fetal Intestine Large	intestine
23	chr11:76900400-76902400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:76900400-76902800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:76900400-76902800	Strong transcription	Spleen	Spleen
26	chr11:76900400-76903000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:76900600-76902800	Weak transcription	Colonic Mucosa	Colon
28	chr11:76900600-76902800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:76900600-76906000	Strong transcription	Placenta	Placenta
30	chr11:76900800-76902800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:76901000-76906000	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:76901200-76902800	Strong transcription	Fetal Intestine Small	intestine
33	chr11:76901400-76902400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:76901600-76901800	Enhancers	Esophagus	oesophagus
35	chr11:76901600-76902000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr11:76901600-76902400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:76901800-76903000	Weak transcription	Esophagus	oesophagus
38	chr11:76902000-76902600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:76902000-76902600	Strong transcription	Fetal Intestine Large	intestine
40	chr11:76902000-76905000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:76902200-76902400	Enhancers	HMEC	breast
42	chr11:76902200-76902400	Enhancers	K562	blood
43	chr11:76902400-76902600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr11:76902400-76902600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:76902400-76902800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr11:76902400-76902800	Flanking Active TSS	K562	blood
47	chr11:76902400-76903000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:76902400-76903200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:76902400-76903200	Active TSS	A549	lung
50	chr11:76902400-76903200	Flanking Active TSS	HMEC	breast

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