Variant report

Variant	rs562275801
Chromosome Location	chr11:76900975-76900976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76837378..76839698-chr11:76898309..76901190,60	MCF-7	breast:
2	chr11:76835516..76838692-chr11:76899720..76903376,3	MCF-7	breast:
3	chr11:76852088..76855016-chr11:76900952..76903015,2	K562	blood:

Variant related genes	Relation type
ENSG00000137474	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1791882	chr11:76900813-76906057	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
3	nsv897936	chr11:76900813-76935002	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76880400-76916600	Weak transcription	Right Atrium	heart
2	chr11:76887600-76902600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:76887800-76902800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:76890800-76918400	Weak transcription	Ovary	ovary
5	chr11:76891200-76902800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76893800-76903800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:76894000-76901600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:76894400-76903800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76894400-76903800	Weak transcription	Gastric	stomach
10	chr11:76894600-76902600	Weak transcription	Pancreas	Pancrea
11	chr11:76895600-76903800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76898400-76901200	Genic enhancers	Fetal Intestine Small	intestine
13	chr11:76899200-76901000	Enhancers	Fetal Muscle Leg	muscle
14	chr11:76899600-76903800	Weak transcription	HepG2	liver
15	chr11:76899800-76901200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:76899800-76902600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:76899800-76928200	Strong transcription	Liver	Liver
18	chr11:76900000-76901400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:76900000-76902000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:76900200-76903800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:76900400-76901600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:76900400-76902000	Genic enhancers	Fetal Intestine Large	intestine
23	chr11:76900400-76902400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:76900400-76902800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:76900400-76902800	Strong transcription	Spleen	Spleen
26	chr11:76900400-76903000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:76900600-76902800	Weak transcription	Colonic Mucosa	Colon
28	chr11:76900600-76902800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:76900600-76906000	Strong transcription	Placenta	Placenta
30	chr11:76900800-76902800	Weak transcription	Rectal Mucosa Donor 31	rectum

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