Variant report

Variant	esv1802698
Chromosome Location	chr7:86539563-86560268
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:557)
CpG islands
(count:61)
Chromatin interactive
region (count:44)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:557 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr7:86556018-86556336	K562	blood:	n/a	n/a
2	CEBPB	chr7:86552871-86553195	Hela-S3	cervix:	n/a	chr7:86553024-86553035
3	CEBPB	chr7:86552864-86553212	K562	blood:	n/a	chr7:86553024-86553035
4	CEBPB	chr7:86552882-86553173	IMR90	lung:	n/a	chr7:86553024-86553035
5	CEBPB	chr7:86552923-86553176	A549	lung:	n/a	chr7:86553024-86553035
6	CEBPB	chr7:86552877-86553209	HepG2	liver:	n/a	chr7:86553024-86553035
7	CTCF	chr7:86555887-86556265	A549	lung:	n/a	n/a
8	CTCF	chr7:86555660-86555810	HFF-Myc	foreskin:	n/a	n/a
9	CTCF	chr7:86543920-86544070	AG04449	skin:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
10	CTCF	chr7:86556060-86556210	GM12869	blood:	n/a	n/a
11	CTCF	chr7:86543900-86544050	SAEC	small airway:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
12	CTCF	chr7:86558900-86559050	HPF	lung:	n/a	n/a
13	CTCF	chr7:86541105-86541324	MCF-7	breast:	n/a	n/a
14	CTCF	chr7:86543949-86544077	MCF-7	breast:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
15	CTCF	chr7:86556060-86556210	GM12870	blood:	n/a	n/a
16	CTCF	chr7:86541180-86541330	GM12871	blood:	n/a	n/a
17	CTCF	chr7:86556100-86556250	NHLF	lung:	n/a	n/a
18	CTCF	chr7:86556060-86556210	HCPEpiC	choroid plexus:	n/a	n/a
19	CTCF	chr7:86543884-86544112	GM12878	blood:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
20	CTCF	chr7:86543920-86544070	NHDF-neo	bronchial:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
21	CTCF	chr7:86543860-86544010	HRPEpiC	eye:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
22	CTCF	chr7:86541100-86541250	Hela-S3	cervix:	n/a	n/a
23	CTCF	chr7:86543928-86544025	GM20000	blood:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
24	CTCF	chr7:86541100-86541250	WERI-Rb-1	eye:	n/a	n/a
25	CTCF	chr7:86556100-86556250	GM12866	blood:	n/a	n/a
26	CTCF	chr7:86556080-86556230	Caco-2	colon:	n/a	n/a
27	CTCF	chr7:86541129-86541279	GM12878	blood:	n/a	n/a
28	CTCF	chr7:86556080-86556230	GM12873	blood:	n/a	n/a
29	CTCF	chr7:86543900-86544050	Hela-S3	cervix:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
30	CTCF	chr7:86543920-86544070	HRE	kidney:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
31	CTCF	chr7:86543960-86544110	GM12865	blood:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
32	CTCF	chr7:86541120-86541270	HPF	lung:	n/a	n/a
33	CTCF	chr7:86543960-86544110	GM12870	blood:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
34	CTCF	chr7:86541160-86541310	NHEK	skin:	n/a	n/a
35	CTCF	chr7:86556100-86556250	HA-sp	spinal cord:	n/a	n/a
36	CTCF	chr7:86556020-86556170	GM12875	blood:	n/a	n/a
37	CTCF	chr7:86543940-86544090	HFF-Myc	foreskin:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
38	CTCF	chr7:86543880-86544030	GM12864	blood:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
39	CTCF	chr7:86541100-86541250	AG09319	gingival:	n/a	n/a
40	CTCF	chr7:86556040-86556190	GM12872	blood:	n/a	n/a
41	CTCF	chr7:86556008-86556297	GM12878	blood:	n/a	n/a
42	CTCF	chr7:86541220-86541370	GM12801	blood:	n/a	n/a
43	CTCF	chr7:86555887-86556386	MCF-7	breast:	n/a	n/a
44	CTCF	chr7:86543860-86544010	NHDF-neo	bronchial:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
45	CTCF	chr7:86556060-86556210	HMF	breast:	n/a	n/a
46	CTCF	chr7:86555951-86556408	IMR90	lung:	n/a	n/a
47	CTCF	chr7:86543893-86544042	SK-N-SH_RA	brain:	n/a	chr7:86543978-86543996 chr7:86543979-86543995 chr7:86543980-86544001
48	CTCF	chr7:86556060-86556210	HA-sp	spinal cord:	n/a	n/a
49	CTCF	chr7:86542220-86542370	HEK293	kidney:	n/a	n/a
50	CTCF	chr7:86541140-86541430	GM12868	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:86547833-86547883	MCF-7	breast:	n/a
2	chr7:86547833-86547883	K562	blood:	n/a
3	chr7:86547833-86547883	SK-N-MC	brain:	n/a
4	chr7:86547833-86547883	HRCEpiC	kidney:	n/a
5	chr7:86547833-86547883	MCF10A-Er-Src	breast:	n/a
6	chr7:86547833-86547883	NH-A	brain:	n/a
7	chr7:86547833-86547883	AoSMC	blood vessel:	n/a
8	chr7:86547833-86547883	RPTEC	kidney:	n/a
9	chr7:86547833-86547883	AG04449	skin:	fetal
10	chr7:86547833-86547883	Caco-2	colon:	n/a
11	chr7:86547833-86547883	HEK293	kidney:	embryo
12	chr7:86547833-86547883	HRE	kidney:	n/a
13	chr7:86547833-86547883	H1-hESC	embryonic stem cell:	embryo
14	chr7:86547833-86547883	AG09319	gingival:	n/a
15	chr7:86547833-86547883	NHDF-neo	bronchial:	n/a
16	chr7:86547833-86547883	ECC-1	luminal epithelium:	n/a
17	chr7:86547833-86547883	A549	lung:	n/a
18	chr7:86547833-86547883	PrEC	prostate:	n/a
19	chr7:86547833-86547883	SK-N-SH_RA	brain:	n/a
20	chr7:86547833-86547883	ProgFib	skin:	n/a
21	chr7:86547833-86547883	HL-60	blood:	n/a
22	chr7:86547833-86547883	SKMC	muscle:	n/a
23	chr7:86547833-86547883	Jurkat	blood:	n/a
24	chr7:86547833-86547883	HPAEpiC	pulmonary alveolar:	n/a
25	chr7:86547833-86547883	GM06990	blood:	n/a
26	chr7:86547833-86547883	GM12892	blood:	n/a
27	chr7:86547833-86547883	Hepatocyte	liver:	n/a
28	chr7:86547833-86547883	U87	brain:	n/a
29	chr7:86547833-86547883	NB4	blood:	n/a
30	chr7:86547833-86547883	GM12878	blood:	n/a
31	chr7:86547833-86547883	HRPEpiC	eye:	n/a
32	chr7:86547833-86547883	HUVEC	blood vessel:	n/a
33	chr7:86547833-86547883	HNPCEpiC	eye:	n/a
34	chr7:86547833-86547883	HIPEpiC	eye:	n/a
35	chr7:86547833-86547883	HCPEpiC	choroid plexus:	n/a
36	chr7:86547833-86547883	HMEC	breast:	n/a
37	chr7:86547833-86547883	HAEpiC	amniotic membrane:	n/a
38	chr7:86547833-86547883	AG09309	skin:	n/a
39	chr7:86547833-86547883	GM19239	blood:	n/a
40	chr7:86547833-86547883	PFSK-1	brain:	n/a
41	chr7:86547833-86547883	HEEpiC	esophagus:	n/a
42	chr7:86547833-86547883	BE2_C	brain:	n/a
43	chr7:86547833-86547883	PANC-1	pancreas:	n/a
44	chr7:86547833-86547883	BJ	skin:	n/a
45	chr7:86547833-86547883	GM12891	blood:	n/a
46	chr7:86547833-86547883	AG10803	skin:	n/a
47	chr7:86547833-86547883	ovcar-3	ovarian:	n/a
48	chr7:86547833-86547883	HCT-116	colon:	n/a
49	chr7:86547833-86547883	SAEC	small airway:	n/a
50	chr7:86547833-86547883	Hela-S3	cervix:	n/a

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:86540771..86562582-chr7:86776173..86789890,50	K562	blood:
2	chr7:86542363..86546305-chr7:86789977..86792162,3	K562	blood:
3	chr7:86543968..86544797-chr7:86555701..86556625,3	K562	blood:
4	chr7:86559198..86561965-chr7:86569480..86571738,3	K562	blood:
5	chr7:86553928..86558459-chr7:86779633..86782031,4	MCF-7	breast:
6	chr7:86538704..86541583-chr7:86542373..86544821,2	K562	blood:
7	chr7:86543968..86544797-chr7:86555701..86556625,3	K562	blood:
8	chr7:86558813..86561965-chr7:86568450..86571738,4	K562	blood:
9	chr7:86556386..86558219-chr7:86560176..86562829,2	K562	blood:
10	chr7:86543892..86544672-chr7:86777496..86778313,3	MCF-7	breast:
11	chr7:86559807..86561598-chr7:86583131..86585530,2	K562	blood:
12	chr7:86557428..86559296-chr7:86784910..86787469,2	K562	blood:
13	chr7:86543997..86548928-chr7:86780247..86785232,8	K562	blood:
14	chr7:86540155..86542887-chr7:86543292..86546028,3	K562	blood:
15	chr7:86558868..86561676-chr7:86564507..86566575,2	K562	blood:
16	chr7:86543872..86545996-chr7:86848026..86850410,2	MCF-7	breast:
17	chr7:86557975..86562796-chr7:86779132..86784723,7	K562	blood:
18	chr7:86543705..86546305-chr7:86790604..86792162,2	K562	blood:
19	chr7:86535930..86538220-chr7:86544113..86545805,2	K562	blood:
20	chr7:86553017..86554703-chr7:86769615..86772464,2	K562	blood:
21	chr7:86554981..86557760-chr7:86561507..86564445,2	MCF-7	breast:
22	chr7:86556043..86556599-chr7:86866396..86867246,2	MCF-7	breast:
23	chr7:86543490..86544424-chr7:86777437..86778157,3	MCF-7	breast:
24	chr7:86556386..86558219-chr7:86560176..86562829,2	K562	blood:
25	chr7:86548433..86550044-chr7:86554057..86556965,2	K562	blood:
26	chr7:86547506..86550161-chr7:86552240..86556965,4	K562	blood:
27	chr7:86554879..86556434-chr7:86778032..86780011,2	K562	blood:
28	chr7:86555804..86556575-chr7:86777404..86778295,4	K562	blood:
29	chr7:86559085..86561840-chr7:86563741..86565276,2	MCF-7	breast:
30	chr7:86556959..86559941-chr7:86687542..86689348,2	MCF-7	breast:
31	chr7:86555365..86557020-chr7:86764559..86766701,2	K562	blood:
32	chr7:86555307..86556365-chr7:86865906..86866848,5	K562	blood:
33	chr7:86547065..86549255-chr7:86847292..86849668,2	MCF-7	breast:
34	chr7:86534317..86536992-chr7:86550731..86553025,2	K562	blood:
35	chr7:86549971..86551747-chr7:86552833..86554814,2	MCF-7	breast:
36	chr7:86555575..86556607-chr7:86777323..86778397,7	MCF-7	breast:
37	chr7:86543495..86544025-chr7:86866260..86866785,2	K562	blood:
38	chr7:86538704..86541583-chr7:86542373..86544821,2	K562	blood:
39	chr7:86554002..86556263-chr7:86783542..86785822,2	K562	blood:
40	chr7:86543870..86544512-chr7:86777399..86778371,5	K562	blood:
41	chr7:86559656..86561904-chr7:86782325..86785012,2	MCF-7	breast:
42	chr7:86556099..86556663-chr7:86865982..86866551,2	MCF-7	breast:
43	chr7:86552300..86553991-chr7:86781126..86783885,2	K562	blood:
44	chr7:86543110..86544214-chr7:86865915..86866860,6	MCF-7	breast:

No data

Variant related genes	Relation type
KIAA1324L	TF binding region
KIAA1324L	CpG island
ENSG00000200397	chromatin interactions
ENSG00000135164	chromatin interactions
ENSG00000164659	chromatin interactions
ENSG00000224046	chromatin interactions
ENSG00000135185	chromatin interactions

Extended variants
information (count: 685 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:685 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs563122803	chr7:86539565-86539566	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs566942433	chr7:86539566-86539567	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs138801773	chr7:86539577-86539578	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs184718108	chr7:86539600-86539601	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs542951290	chr7:86539607-86539608	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs114728017	chr7:86539611-86539612	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs187008633	chr7:86539698-86539699	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs370837979	chr7:86539859-86539860	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs10271867	chr7:86539946-86539947	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs149305482	chr7:86539964-86539965	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs571371829	chr7:86539972-86539973	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs532453527	chr7:86540037-86540038	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs199989269	chr7:86540073-86540074	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs550978828	chr7:86540080-86540081	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs149618559	chr7:86540100-86540101	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs78934163	chr7:86540109-86540110	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs536142762	chr7:86540129-86540130	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs147400782	chr7:86540163-86540164	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs567471867	chr7:86540222-86540223	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs534779988	chr7:86540235-86540236	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs139783775	chr7:86540296-86540297	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs577847690	chr7:86540313-86540314	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs191437154	chr7:86540335-86540336	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs556964861	chr7:86540360-86540361	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs575123972	chr7:86540368-86540369	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs543318130	chr7:86540373-86540374	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs561378233	chr7:86540381-86540382	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs544792762	chr7:86540390-86540391	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs573125235	chr7:86540430-86540431	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs557722134	chr7:86540435-86540436	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs576023884	chr7:86540445-86540446	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs143705928	chr7:86540486-86540487	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs115051593	chr7:86540488-86540489	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs550785301	chr7:86540496-86540497	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs147141822	chr7:86540510-86540511	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs529995579	chr7:86540526-86540527	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs377475860	chr7:86540551-86540552	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs371238013	chr7:86540617-86540618	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs2519712	chr7:86540636-86540637	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs567533543	chr7:86540638-86540639	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs534900190	chr7:86540716-86540717	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs148601578	chr7:86540720-86540721	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183682942	chr7:86540758-86540759	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs571464890	chr7:86540769-86540770	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs538769292	chr7:86540776-86540777	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs537965231	chr7:86540779-86540780	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs556743317	chr7:86540821-86540822	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs575200013	chr7:86540842-86540843	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs535846254	chr7:86540885-86540886	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs529498265	chr7:86540946-86540947	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Biliary cancer	19435499	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Neurodevelopmental disorder	22521361	CNVD
Metanephric adenoma	20802469	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Schizophrenia	17879154	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	16461572	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	20858243	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	22341455	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:198 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86495200-86542000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:86495800-86550000	Weak transcription	Lung	lung
3	chr7:86498400-86576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:86507000-86553200	Weak transcription	Pancreas	Pancrea
5	chr7:86507400-86561400	Weak transcription	Aorta	Aorta
6	chr7:86508000-86551200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:86508000-86560800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:86508000-86566800	Weak transcription	Brain Anterior Caudate	brain
9	chr7:86508800-86542200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:86510800-86543800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:86512600-86545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:86516000-86556400	Weak transcription	Fetal Stomach	stomach
13	chr7:86517000-86541000	Weak transcription	HUVEC	blood vessel
14	chr7:86518000-86568800	Weak transcription	Psoas Muscle	Psoas
15	chr7:86518000-86577000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:86518600-86542800	Weak transcription	K562	blood
17	chr7:86521000-86576400	Weak transcription	Hela-S3	cervix
18	chr7:86522200-86540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:86522200-86540800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:86522400-86542800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:86527000-86577000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:86527200-86540800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:86527200-86542000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:86527200-86575800	Weak transcription	Left Ventricle	heart
25	chr7:86527400-86540800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:86527600-86540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:86530400-86568400	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:86530600-86540800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:86531200-86540600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:86531200-86568800	Weak transcription	Brain Angular Gyrus	brain
31	chr7:86534200-86542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:86535600-86543800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:86535600-86547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:86535800-86540400	Weak transcription	Adipose Nuclei	Adipose
35	chr7:86537000-86540600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:86537200-86542000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:86537800-86553800	Weak transcription	Stomach Mucosa	stomach
38	chr7:86538000-86540600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:86538400-86540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:86538400-86543600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:86538600-86543600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:86539200-86578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:86539600-86568000	Weak transcription	Fetal Brain Male	brain
44	chr7:86539800-86555400	Weak transcription	Brain Germinal Matrix	brain
45	chr7:86540400-86543600	Strong transcription	Adipose Nuclei	Adipose
46	chr7:86540400-86543800	Weak transcription	HepG2	liver
47	chr7:86540600-86542400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:86540600-86542800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:86540600-86544200	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:86540800-86541000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links