Variant report

Variant	rs577847690
Chromosome Location	chr7:86540313-86540314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86538704..86541583-chr7:86542373..86544821,2	K562	blood:

Variant related genes	Relation type
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
7	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
8	esv1802698	chr7:86539563-86560268	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86495200-86542000	Weak transcription	Brain Substantia Nigra	brain
2	chr7:86495800-86550000	Weak transcription	Lung	lung
3	chr7:86498400-86576200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:86507000-86553200	Weak transcription	Pancreas	Pancrea
5	chr7:86507400-86561400	Weak transcription	Aorta	Aorta
6	chr7:86508000-86551200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:86508000-86560800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:86508000-86566800	Weak transcription	Brain Anterior Caudate	brain
9	chr7:86508800-86542200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:86510800-86543800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:86512600-86545000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr7:86516000-86556400	Weak transcription	Fetal Stomach	stomach
13	chr7:86517000-86541000	Weak transcription	HUVEC	blood vessel
14	chr7:86518000-86568800	Weak transcription	Psoas Muscle	Psoas
15	chr7:86518000-86577000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:86518600-86542800	Weak transcription	K562	blood
17	chr7:86521000-86576400	Weak transcription	Hela-S3	cervix
18	chr7:86522200-86540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:86522200-86540800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:86522400-86542800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:86527000-86577000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr7:86527200-86540800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:86527200-86542000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr7:86527200-86575800	Weak transcription	Left Ventricle	heart
25	chr7:86527400-86540800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:86527600-86540800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:86530400-86568400	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:86530600-86540800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:86531200-86540600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:86531200-86568800	Weak transcription	Brain Angular Gyrus	brain
31	chr7:86534200-86542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:86535600-86543800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:86535600-86547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:86535800-86540400	Weak transcription	Adipose Nuclei	Adipose
35	chr7:86537000-86540600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr7:86537200-86542000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:86537800-86553800	Weak transcription	Stomach Mucosa	stomach
38	chr7:86538000-86540600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:86538400-86543600	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr7:86538600-86543600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:86539200-86578800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:86539600-86568000	Weak transcription	Fetal Brain Male	brain
43	chr7:86539800-86555400	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links