Variant report

Variant	esv1803998
Chromosome Location	chr13:48966078-48986320
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:48971963-48972198	HepG2	liver:	n/a	n/a
2	ARID3A	chr13:48974495-48974932	HepG2	liver:	n/a	n/a
3	ARID3A	chr13:48967789-48967792	HepG2	liver:	n/a	n/a
4	ATF2	chr13:48976685-48977143	GM12878	blood:	n/a	n/a
5	BACH1	chr13:48972984-48973002	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr13:48976672-48977012	GM12878	blood:	n/a	n/a
7	BHLHE40	chr13:48984476-48984749	HepG2	liver:	n/a	n/a
8	CEBPB	chr13:48974888-48975322	Hela-S3	cervix:	n/a	n/a
9	CEBPB	chr13:48980033-48980409	IMR90	lung:	n/a	n/a
10	CEBPB	chr13:48984394-48984725	HepG2	liver:	n/a	n/a
11	CEBPB	chr13:48977229-48977461	Hela-S3	cervix:	n/a	chr13:48977347-48977356 chr13:48977346-48977357 chr13:48977345-48977358 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977345-48977356
12	CEBPB	chr13:48977218-48977489	K562	blood:	n/a	chr13:48977347-48977356 chr13:48977346-48977357 chr13:48977345-48977358 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977345-48977356
13	CEBPB	chr13:48980113-48980423	HepG2	liver:	n/a	n/a
14	CEBPB	chr13:48977183-48977518	HepG2	liver:	n/a	chr13:48977347-48977356 chr13:48977346-48977357 chr13:48977345-48977358 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977345-48977356
15	CEBPB	chr13:48967454-48967611	HepG2	liver:	n/a	n/a
16	CEBPB	chr13:48967365-48967696	HepG2	liver:	n/a	n/a
17	CEBPB	chr13:48977223-48977475	A549	lung:	n/a	chr13:48977347-48977356 chr13:48977346-48977357 chr13:48977345-48977358 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977345-48977356
18	CEBPB	chr13:48977159-48977542	IMR90	lung:	n/a	chr13:48977347-48977356 chr13:48977346-48977357 chr13:48977345-48977358 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977347-48977356 chr13:48977345-48977356
19	CHD1	chr13:48986128-48986328	GM12878	blood:	n/a	n/a
20	CREB1	chr13:48984374-48984802	HepG2	liver:	n/a	n/a
21	CREB1	chr13:48984378-48984756	HepG2	liver:	n/a	n/a
22	CTCF	chr13:48981040-48981190	GM12872	blood:	n/a	n/a
23	CTCF	chr13:48975162-48975309	Medullo	brain:	n/a	n/a
24	CTCF	chr13:48981040-48981190	HepG2	liver:	n/a	n/a
25	CTCF	chr13:48975186-48975277	Pancreas_OC	pancreas:	n/a	n/a
26	CTCF	chr13:48975140-48975290	HCM	heart:	n/a	n/a
27	CTCF	chr13:48975160-48975310	HVMF	connective:	n/a	n/a
28	CTCF	chr13:48975162-48975307	GM12878	blood:	n/a	n/a
29	CTCF	chr13:48975214-48975259	Gliobla	brain:	n/a	n/a
30	CTCF	chr13:48975057-48975437	GM12878	blood:	n/a	n/a
31	CTCF	chr13:48981120-48981270	HEK293	kidney:	n/a	n/a
32	CTCF	chr13:48981180-48981330	GM12865	blood:	n/a	n/a
33	CTCF	chr13:48975140-48975290	AG10803	skin:	n/a	n/a
34	CTCF	chr13:48975157-48975261	GM13976	blood:	n/a	n/a
35	CTCF	chr13:48981100-48981250	GM12874	blood:	n/a	n/a
36	CTCF	chr13:48975152-48975368	Spleen_OC	spleen:	n/a	n/a
37	CTCF	chr13:48975200-48975350	Caco-2	colon:	n/a	n/a
38	CTCF	chr13:48981060-48981210	GM12873	blood:	n/a	n/a
39	CTCF	chr13:48975180-48975330	GM12878	blood:	n/a	n/a
40	CTCF	chr13:48975100-48975250	GM12865	blood:	n/a	n/a
41	CTCF	chr13:48975180-48975330	GM12872	blood:	n/a	n/a
42	CTCF	chr13:48977620-48977770	GM12865	blood:	n/a	n/a
43	CTCF	chr13:48981020-48981170	HVMF	connective:	n/a	n/a
44	CTCF	chr13:48975080-48975230	HPAF	blood vessel:	n/a	n/a
45	CTCF	chr13:48975177-48975255	GM10266	blood:	n/a	n/a
46	CTCF	chr13:48975186-48975330	Lung_OC	lung:	n/a	n/a
47	CTCF	chr13:48981040-48981190	HCT-116	colon:	n/a	n/a
48	CTCF	chr13:48975060-48975210	HMEC	breast:	n/a	n/a
49	CTCF	chr13:48975153-48975320	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr13:48975169-48975280	GM13977	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:48974707-48974757	HMEC	breast:	n/a
2	chr13:48986124-48986174	AG04450	lung:	fetal
3	chr13:48974707-48974757	RPTEC	kidney:	n/a
4	chr13:48974707-48974757	Hepatocyte	liver:	n/a
5	chr13:48974707-48974757	AG09319	gingival:	n/a
6	chr13:48974707-48974757	SK-N-SH_RA	brain:	n/a
7	chr13:48974707-48974757	SK-N-SH	brain:	n/a
8	chr13:48986124-48986174	SK-N-SH	brain:	n/a
9	chr13:48986124-48986174	HCT-116	colon:	n/a
10	chr13:48974707-48974757	AoSMC	blood vessel:	n/a
11	chr13:48974707-48974757	HRCEpiC	kidney:	n/a
12	chr13:48986124-48986174	HUVEC	blood vessel:	n/a
13	chr13:48974707-48974757	BE2_C	brain:	n/a
14	chr13:48974707-48974757	HepG2	liver:	n/a
15	chr13:48986124-48986174	NHBE	bronchial:	n/a
16	chr13:48986124-48986174	AG09309	skin:	n/a
17	chr13:48974707-48974757	AG04450	lung:	fetal
18	chr13:48986124-48986174	NHDF-neo	bronchial:	n/a
19	chr13:48986124-48986174	MCF-7	breast:	n/a
20	chr13:48974707-48974757	T-47D	breast:	n/a
21	chr13:48986124-48986174	PrEC	prostate:	n/a
22	chr13:48974707-48974757	PFSK-1	brain:	n/a
23	chr13:48986124-48986174	GM12878	blood:	n/a
24	chr13:48974707-48974757	NHBE	bronchial:	n/a
25	chr13:48986124-48986174	HepG2	liver:	n/a
26	chr13:48986124-48986174	AG04449	skin:	fetal
27	chr13:48986124-48986174	Caco-2	colon:	n/a
28	chr13:48986124-48986174	HRE	kidney:	n/a
29	chr13:48986124-48986174	SK-N-MC	brain:	n/a
30	chr13:48986124-48986174	ovcar-3	ovarian:	n/a
31	chr13:48986124-48986174	MCF10A-Er-Src	breast:	n/a
32	chr13:48986124-48986174	A549	lung:	n/a
33	chr13:48974707-48974757	HCPEpiC	choroid plexus:	n/a
34	chr13:48986124-48986174	BJ	skin:	n/a
35	chr13:48986124-48986174	AG09319	gingival:	n/a
36	chr13:48986124-48986174	SAEC	small airway:	n/a
37	chr13:48986124-48986174	AoSMC	blood vessel:	n/a
38	chr13:48974707-48974757	HEK293	kidney:	embryo
39	chr13:48974707-48974757	MCF-7	breast:	n/a
40	chr13:48974707-48974757	HCM	heart:	n/a
41	chr13:48974707-48974757	SK-N-MC	brain:	n/a
42	chr13:48986124-48986174	HEEpiC	esophagus:	n/a
43	chr13:48974707-48974757	HRPEpiC	eye:	n/a
44	chr13:48974707-48974757	ECC-1	luminal epithelium:	n/a
45	chr13:48986124-48986174	AG10803	skin:	n/a
46	chr13:48986124-48986174	NB4	blood:	n/a
47	chr13:48974707-48974757	GM12878	blood:	n/a
48	chr13:48974707-48974757	NT2-D1	testis:	n/a
49	chr13:48974707-48974757	ovcar-3	ovarian:	n/a
50	chr13:48974707-48974757	ProgFib	skin:	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:48984068..48985636-chr13:49106032..49107936,2	K562	blood:
2	chr13:48979885..48981623-chr13:48983630..48986045,2	K562	blood:
3	chr13:48962225..48964484-chr13:48966549..48969073,2	K562	blood:
4	chr13:48979509..48982464-chr13:48983015..48985946,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPAR6-2	chr13:48978317-48978399	NONHSAT033712
2	lnc-LPAR6-2	chr13:48982760-48982903	NONHSAT033712
3	lnc-LPAR6-2	chr13:48975434-48975543	NONHSAT033712
4	lnc-LPAR6-2	chr13:48978317-48978399	NONHSAT033710
5	lnc-LPAR6-2	chr13:48978317-48978399	NONHSAT033713
6	lnc-LPAR6-2	chr13:48980692-48980845	NONHSAT033710

Variant related genes	Relation type
LPAR6	TF binding region
LPAR6	CpG island
ENSG00000139679	chromatin interactions
ENSG00000136161	chromatin interactions

Extended variants
information (count: 706 )
Associated
traits (count: 130 )

Variant overlapped rSNPs/rCNVs (count:706 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs571585	chr13:48966106-48966107	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs373736555	chr13:48966114-48966115	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs546688255	chr13:48966115-48966116	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs518322	chr13:48966118-48966119	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572412	chr13:48966162-48966163	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs71432982	chr13:48966174-48966175	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs376857022	chr13:48966180-48966181	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs144681156	chr13:48966224-48966225	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs558685693	chr13:48966250-48966251	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs578054565	chr13:48966289-48966290	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs548726022	chr13:48966291-48966292	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs148507674	chr13:48966349-48966350	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs556975957	chr13:48966362-48966363	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs575653170	chr13:48966384-48966385	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs539628221	chr13:48966387-48966388	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs184848065	chr13:48966390-48966391	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs573098517	chr13:48966408-48966409	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs541133917	chr13:48966410-48966411	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs541016564	chr13:48966434-48966435	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs141914442	chr13:48966466-48966467	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs189325386	chr13:48966539-48966540	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs563624184	chr13:48966545-48966546	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs147269089	chr13:48966567-48966568	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs531134105	chr13:48966575-48966576	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs368011141	chr13:48966697-48966698	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs575010139	chr13:48966754-48966755	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs552470709	chr13:48966783-48966784	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs71661651	chr13:48966887-48966888	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs201573904	chr13:48966889-48966890	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs398117308	chr13:48966890-48966891	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs74945740	chr13:48966900-48966901	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs201058227	chr13:48966902-48966903	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs564303582	chr13:48966913-48966914	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs528691519	chr13:48966918-48966919	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs9591163	chr13:48966920-48966921	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs549267182	chr13:48966922-48966923	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs140952294	chr13:48966969-48966970	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs535099016	chr13:48966974-48966975	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs374240708	chr13:48967007-48967008	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs117761063	chr13:48967072-48967073	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs144842158	chr13:48967077-48967078	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs147920295	chr13:48967117-48967118	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs139414178	chr13:48967170-48967171	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs372686296	chr13:48967189-48967190	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs545846726	chr13:48967192-48967193	Weak transcription Strong transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs150049147	chr13:48967207-48967208	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs567967556	chr13:48967209-48967210	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs2854363	chr13:48967230-48967231	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs181669786	chr13:48967238-48967239	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs145483921	chr13:48967253-48967254	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:130)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17899364	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Trisomy	24170809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Alveolar rhabdomyosarcoma	16790082	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	19242612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Retinoblastoma	21504564	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Mental retardation	17502991	CNVD
Retinoblastoma	17502991	CNVD
Bipolar disorder	18458673	CNVD
Liposarcoma	21253554	CNVD
T-cell lymphomas	19863542	CNVD
Cervical cancer	21062161	CNVD
microdeletion syndrome	19284877	CNVD
Ovarian cancer	22355333	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	19435819	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Breast cancer	21858162	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	17237825	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Lung adenocarcinoma	21151896	CNVD
Breast cancer	21518781	CNVD
Mantle cell lymphoma	21518781	CNVD
Ovarian cancer	21518781	CNVD
Retinoblastoma	21518781	CNVD
Myelofibrosis	22110671	CNVD
Hereditary prostate cancer	22028916	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Prostate cancer	17217626	CNVD
Ovarian cancer	21781307	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
Chronic myeloid leukemia	21384125	CNVD
Attention deficit hyperactivity disorder	22214315	CNVD
Chronic motor tic disorder	22214315	CNVD
Schizophrenia	22214315	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Osteosarcoma	21215367	CNVD

Chromatin state (count:878 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48909000-48972200	Weak transcription	NHEK	skin
2	chr13:48912200-48968200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:48914800-48972000	Weak transcription	NHLF	lung
4	chr13:48916800-48985400	Weak transcription	Colonic Mucosa	Colon
5	chr13:48918600-48967200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:48920200-48974400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr13:48921600-48972000	Weak transcription	Stomach Mucosa	stomach
8	chr13:48925200-48974800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:48925400-48976400	Weak transcription	Ovary	ovary
10	chr13:48925600-48968000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:48926800-48972000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:48928200-48971800	Weak transcription	A549	lung
13	chr13:48929800-48968400	Weak transcription	Esophagus	oesophagus
14	chr13:48933400-48974000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:48934600-48984200	Weak transcription	Right Ventricle	heart
16	chr13:48935400-48968200	Weak transcription	Spleen	Spleen
17	chr13:48936000-48974600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr13:48936200-48968200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr13:48936400-48973200	Weak transcription	Hela-S3	cervix
20	chr13:48941800-48973200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:48942400-48967200	Weak transcription	Brain Germinal Matrix	brain
22	chr13:48943000-48970800	Weak transcription	Pancreas	Pancrea
23	chr13:48943600-48984200	Weak transcription	Brain Angular Gyrus	brain
24	chr13:48944000-48974400	Weak transcription	Brain Anterior Caudate	brain
25	chr13:48944200-48973800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr13:48944600-48983400	Weak transcription	Psoas Muscle	Psoas
27	chr13:48945000-48972000	Weak transcription	HSMMtube	muscle
28	chr13:48945200-48967000	Weak transcription	HepG2	liver
29	chr13:48945400-48974400	Weak transcription	Small Intestine	intestine
30	chr13:48949200-48967800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr13:48949400-48972800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr13:48949600-48968200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr13:48949600-48968200	Weak transcription	Fetal Kidney	kidney
34	chr13:48950000-48967800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr13:48950000-48967800	Weak transcription	Thymus	Thymus
36	chr13:48950000-48968200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:48950600-48968400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:48952600-48967400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr13:48953800-48972000	Weak transcription	Osteobl	bone
40	chr13:48954400-48972200	Weak transcription	HUVEC	blood vessel
41	chr13:48954800-48967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:48954800-48967200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:48954800-48975000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr13:48955000-48966800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:48955200-48967400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr13:48955800-48972000	Weak transcription	HMEC	breast
47	chr13:48955800-48972000	Weak transcription	NHDF-Ad	bronchial
48	chr13:48956000-48967000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:48956000-48967200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr13:48956000-48974000	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links