Variant report

Variant	esv1822041
Chromosome Location	chr16:47399460-47569732
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1977)
CpG islands
(count:1100)
Chromatin interactive
region (count:142)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1977 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:47484519-47484647	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:47494825-47496228	HepG2	liver:	n/a	n/a
3	ARID3A	chr16:47421094-47421294	HepG2	liver:	n/a	n/a
4	ARID3A	chr16:47507738-47508382	HepG2	liver:	n/a	n/a
5	ARID3A	chr16:47431618-47431623	HepG2	liver:	n/a	n/a
6	ARID3A	chr16:47556945-47557537	HepG2	liver:	n/a	n/a
7	ARID3A	chr16:47524403-47524722	K562	blood:	n/a	n/a
8	ARID3A	chr16:47500293-47502483	K562	blood:	n/a	n/a
9	ARID3A	chr16:47482890-47483076	K562	blood:	n/a	n/a
10	ARID3A	chr16:47554148-47554743	K562	blood:	n/a	n/a
11	ARID3A	chr16:47495283-47496261	K562	blood:	n/a	n/a
12	ARID3A	chr16:47519386-47519410	HepG2	liver:	n/a	n/a
13	ARID3A	chr16:47526802-47527555	K562	blood:	n/a	n/a
14	ARID3A	chr16:47526816-47527197	HepG2	liver:	n/a	n/a
15	ARID3A	chr16:47498536-47498645	K562	blood:	n/a	n/a
16	ARID3A	chr16:47509336-47510111	HepG2	liver:	n/a	n/a
17	ARID3A	chr16:47538556-47538932	K562	blood:	n/a	n/a
18	ARID3A	chr16:47428252-47428453	HepG2	liver:	n/a	n/a
19	ARID3A	chr16:47533067-47533932	HepG2	liver:	n/a	n/a
20	ARID3A	chr16:47507313-47507485	HepG2	liver:	n/a	n/a
21	ARID3A	chr16:47426038-47426363	K562	blood:	n/a	n/a
22	ARID3A	chr16:47499795-47500033	K562	blood:	n/a	n/a
23	ATF1	chr16:47426003-47426482	K562	blood:	n/a	n/a
24	ATF1	chr16:47495611-47496214	K562	blood:	n/a	n/a
25	ATF1	chr16:47526819-47527180	K562	blood:	n/a	n/a
26	ATF1	chr16:47501985-47502361	K562	blood:	n/a	n/a
27	ATF1	chr16:47554214-47554593	K562	blood:	n/a	n/a
28	ATF1	chr16:47422668-47422993	K562	blood:	n/a	n/a
29	ATF1	chr16:47427309-47427338	K562	blood:	n/a	n/a
30	ATF2	chr16:47557169-47557724	GM12878	blood:	n/a	n/a
31	ATF2	chr16:47526273-47527368	GM12878	blood:	n/a	n/a
32	ATF3	chr16:47494755-47495369	HepG2	liver:	n/a	n/a
33	ATF3	chr16:47494801-47495349	K562	blood:	n/a	n/a
34	ATF3	chr16:47494617-47495423	HepG2	liver:	n/a	n/a
35	ATF3	chr16:47494770-47495381	GM12878	blood:	n/a	n/a
36	ATF3	chr16:47494797-47495311	H1-hESC	embryonic stem cell:	n/a	n/a
37	ATF3	chr16:47501997-47502334	K562	blood:	n/a	n/a
38	ATF3	chr16:47494735-47495286	K562	blood:	n/a	n/a
39	ATF3	chr16:47494883-47495224	GM12878	blood:	n/a	n/a
40	ATF3	chr16:47494783-47495259	H1-hESC	embryonic stem cell:	n/a	n/a
41	BACH1	chr16:47502025-47502424	K562	blood:	n/a	n/a
42	BACH1	chr16:47538552-47539389	K562	blood:	n/a	n/a
43	BACH1	chr16:47502056-47502356	H1-hESC	embryonic stem cell:	n/a	n/a
44	BACH1	chr16:47495881-47496208	H1-hESC	embryonic stem cell:	n/a	n/a
45	BACH1	chr16:47495280-47495285	K562	blood:	n/a	n/a
46	BACH1	chr16:47495724-47496205	K562	blood:	n/a	n/a
47	BATF	chr16:47426120-47426365	GM12878	blood:	n/a	n/a
48	BATF	chr16:47526497-47527241	GM12878	blood:	n/a	n/a
49	BATF	chr16:47526905-47527207	GM12878	blood:	n/a	n/a
50	BATF	chr16:47557294-47557576	GM12878	blood:	n/a	n/a

(count:1100 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:47420506-47420556	SKMC	muscle:	n/a
2	chr16:47495113-47495163	GM12892	blood:	n/a
3	chr16:47420506-47420556	SKMC	muscle:	n/a
4	chr16:47495113-47495163	GM12892	blood:	n/a
5	chr16:47495445-47495495	PrEC	prostate:	n/a
6	chr16:47495746-47495796	RPTEC	kidney:	n/a
7	chr16:47539166-47539216	AG09309	skin:	n/a
8	chr16:47495541-47495591	Jurkat	blood:	n/a
9	chr16:47494258-47494308	PrEC	prostate:	n/a
10	chr16:47539203-47539253	GM06990	blood:	n/a
11	chr16:47539137-47539187	NHDF-neo	bronchial:	n/a
12	chr16:47539166-47539216	HL-60	blood:	n/a
13	chr16:47539137-47539187	Caco-2	colon:	n/a
14	chr16:47527034-47527084	HCM	heart:	n/a
15	chr16:47495110-47495160	AG04449	skin:	fetal
16	chr16:47527034-47527084	IMR90	lung:	fetal
17	chr16:47539203-47539253	GM12878	blood:	n/a
18	chr16:47494258-47494308	H1-hESC	embryonic stem cell:	embryo
19	chr16:47492286-47492336	NHDF-neo	bronchial:	n/a
20	chr16:47494711-47494761	HAEpiC	amniotic membrane:	n/a
21	chr16:47497822-47497872	AG09319	gingival:	n/a
22	chr16:47492286-47492336	HepG2	liver:	n/a
23	chr16:47539166-47539216	HEK293	kidney:	embryo
24	chr16:47420506-47420556	NHDF-neo	bronchial:	n/a
25	chr16:47494824-47494874	HL-60	blood:	n/a
26	chr16:47495768-47495818	RPTEC	kidney:	n/a
27	chr16:47494711-47494761	NB4	blood:	n/a
28	chr16:47494711-47494761	T-47D	breast:	n/a
29	chr16:47527034-47527084	SK-N-MC	brain:	n/a
30	chr16:47495110-47495160	T-47D	breast:	n/a
31	chr16:47539166-47539216	Hela-S3	cervix:	n/a
32	chr16:47494711-47494761	MCF10A-Er-Src	breast:	n/a
33	chr16:47495110-47495160	LNCaP	prostate:	n/a
34	chr16:47497822-47497872	HCF	heart:	n/a
35	chr16:47492286-47492336	AG04450	lung:	fetal
36	chr16:47495746-47495796	SK-N-SH	brain:	n/a
37	chr16:47539137-47539187	GM06990	blood:	n/a
38	chr16:47497822-47497872	PFSK-1	brain:	n/a
39	chr16:47495768-47495818	HMEC	breast:	n/a
40	chr16:47527034-47527084	ovcar-3	ovarian:	n/a
41	chr16:47495746-47495796	Hepatocyte	liver:	n/a
42	chr16:47539137-47539187	T-47D	breast:	n/a
43	chr16:47495541-47495591	NB4	blood:	n/a
44	chr16:47495541-47495591	HCM	heart:	n/a
45	chr16:47539203-47539253	HRE	kidney:	n/a
46	chr16:47527034-47527084	PFSK-1	brain:	n/a
47	chr16:47539166-47539216	SK-N-MC	brain:	n/a
48	chr16:47492286-47492336	NT2-D1	testis:	n/a
49	chr16:47539137-47539187	SKMC	muscle:	n/a
50	chr16:47495110-47495160	Jurkat	blood:	n/a

(count:142 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr16:47506877..47508386-chr16:47511006..47513909,2	K562	blood:
2	chr16:47479859..47483126-chr16:47518741..47522601,4	K562	blood:
3	chr16:47486141..47491798-chr16:47493044..47496709,8	MCF-7	breast:
4	chr16:47404244..47406062-chr16:47411179..47413433,2	K562	blood:
5	chr16:47480331..47482328-chr16:47492246..47495576,3	MCF-7	breast:
6	chr16:47521997..47524877-chr16:47525537..47527944,2	K562	blood:
7	chr16:47560964..47562749-chr16:47565268..47567477,2	K562	blood:
8	chr16:47515931..47518831-chr16:47521525..47524348,3	K562	blood:
9	chr16:47489451..47492163-chr16:47492304..47496167,3	K562	blood:
10	chr16:47493923..47496746-chr16:47529006..47531243,3	K562	blood:
11	chr1:192021477..192022058-chr16:47435294..47435896,2	MCF-7	breast:
12	chr16:47506877..47508389-chr16:47511649..47513909,2	K562	blood:
13	chr12:25403374..25403874-chr16:47495157..47495674,2	Hela-S3	cervix:
14	chr16:47538624..47539255-chr19:24184251..24185320,3	MCF-7	breast:
15	chr16:47421435..47423287-chr16:47429426..47431466,2	MCF-7	breast:
16	chr16:47542191..47545156-chr16:47546024..47549181,3	K562	blood:
17	chr16:47514435..47516490-chr16:47516541..47519935,3	K562	blood:
18	chr16:47512020..47514843-chr16:47517675..47520024,2	K562	blood:
19	chr16:47439487..47441195-chr16:47493204..47494931,2	K562	blood:
20	chr16:47419086..47421518-chr16:47425690..47428678,2	K562	blood:
21	chr16:47493905..47495976-chr16:47496733..47498612,2	MCF-7	breast:
22	chr16:47500719..47503610-chr16:47510639..47513571,4	K562	blood:
23	chr16:47480415..47483126-chr16:47520058..47521883,2	K562	blood:
24	chr16:47407846..47410097-chr16:47493720..47495618,2	MCF-7	breast:
25	chr16:47449583..47451141-chr16:47452818..47455615,2	K562	blood:
26	chr16:47464879..47466397-chr16:47504717..47506667,2	K562	blood:
27	chr16:47530496..47533304-chr16:47537314..47539416,3	K562	blood:
28	chr16:47485624..47489187-chr16:47492609..47496944,6	K562	blood:
29	chr16:47502099..47504584-chr16:47526951..47528627,3	K562	blood:
30	chr16:47483080..47485293-chr16:47494461..47496130,2	K562	blood:
31	chr16:47525470..47528929-chr16:47529310..47531688,3	K562	blood:
32	chr16:47483080..47485293-chr16:47494461..47496130,2	K562	blood:
33	chr16:47500342..47506721-chr16:47514207..47520673,8	K562	blood:
34	chr16:47490166..47492489-chr16:47495627..47497742,2	MCF-7	breast:
35	chr16:47516457..47520432-chr16:47524851..47526977,4	K562	blood:
36	chr16:47484770..47486422-chr16:47488487..47490664,2	K562	blood:
37	chr16:47503725..47506287-chr16:47510577..47512512,2	K562	blood:
38	chr16:47495762..47498105-chr16:47514546..47516108,2	K562	blood:
39	chr16:47504741..47507121-chr16:47699160..47701122,2	K562	blood:
40	chr16:47432128..47434331-chr16:47440523..47442173,2	K562	blood:
41	chr16:47506877..47508386-chr16:47511006..47513909,2	K562	blood:
42	chr16:47431082..47433440-chr16:47448856..47451690,2	K562	blood:
43	chr16:47464879..47466397-chr16:47504717..47506667,2	K562	blood:
44	chr16:47542191..47545156-chr16:47546024..47549181,3	K562	blood:
45	chr16:47538608..47539232-chr19:24184323..24185236,2	MCF-7	breast:
46	chr16:47410478..47412557-chr16:47418181..47419832,2	K562	blood:
47	chr16:47502629..47504464-chr16:47550187..47553009,2	K562	blood:
48	chr16:47535504..47537200-chr16:47537688..47539463,2	K562	blood:
49	chr16:47165353..47167030-chr16:47501273..47503652,2	K562	blood:
50	chr16:47414999..47416779-chr16:47426275..47428924,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPT2-4	chr16:47563387-47563827	ENSG00000262038.1
2	lnc-GPT2-12	chr16:47495240-47495337	NONHSAT142295
3	lnc-GPT2-4	chr16:47563386-47563827	NONHSAT142298
4	lnc-GPT2-4	chr16:47563101-47563152	ENSG00000262038.1
5	lnc-GPT2-4	chr16:47563101-47563152	NONHSAT142298
6	lnc-GPT2-12	chr16:47497009-47497433	NONHSAT142295

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ITFG1	hsa-miR-23b-3p	chr16:47484216-47484236

Variant related genes	Relation type
RNA5SP424	TF binding region
ITFG1	TF binding region
ENSG00000262038	TF binding region
PHKB	TF binding region
RNA5SP425	TF binding region
RNA5SP424	CpG island
ITFG1	CpG island
ENSG00000262038	CpG island
PHKB	CpG island
RNA5SP425	CpG island
ENSG00000259918	chromatin interactions
ENSG00000133703	chromatin interactions
ENSG00000260281	chromatin interactions
ENSG00000129636	chromatin interactions
ENSG00000162664	chromatin interactions
ENSG00000222268	chromatin interactions
ENSG00000104613	chromatin interactions
ENSG00000177628	chromatin interactions
ENSG00000171208	chromatin interactions
ENSG00000212290	chromatin interactions
ENSG00000102893	chromatin interactions

Extended variants
information (count: 5485 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:5485 , 50 per page) page: 1 2 3 4 5 6 7 ... 110

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16956093	chr16:47399460-47399461	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs529346948	chr16:47399502-47399503	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs140502191	chr16:47399510-47399511	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs577838880	chr16:47399518-47399519	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559503263	chr16:47399544-47399545	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147072448	chr16:47399578-47399579	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs138389577	chr16:47399582-47399583	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201987775	chr16:47399641-47399642	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs201509648	chr16:47399654-47399655	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577962250	chr16:47399670-47399671	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs76973321	chr16:47399671-47399672	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs398078613	chr16:47399685-47399686	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs370622306	chr16:47399716-47399717	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs143860459	chr16:47399726-47399727	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373042811	chr16:47399764-47399765	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs544889375	chr16:47399767-47399768	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201992506	chr16:47399821-47399822	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570181104	chr16:47399850-47399851	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs534432473	chr16:47399889-47399890	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs552989997	chr16:47399909-47399910	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs577219655	chr16:47399954-47399955	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs538242928	chr16:47399959-47399960	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs560328937	chr16:47399992-47399993	Enhancers Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs558070535	chr16:47400087-47400088	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189595708	chr16:47400101-47400102	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368906463	chr16:47400170-47400171	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs111910894	chr16:47400183-47400184	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527471627	chr16:47400188-47400189	Enhancers Weak transcription Flanking Active TSS Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs180841238	chr16:47400275-47400276	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs34701780	chr16:47400307-47400308	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187008140	chr16:47400363-47400364	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs559752946	chr16:47400385-47400386	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs192247173	chr16:47400391-47400392	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545412856	chr16:47400401-47400402	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs548714484	chr16:47400416-47400417	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs563611906	chr16:47400451-47400452	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs184083026	chr16:47400469-47400470	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs188573780	chr16:47400577-47400578	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs147237054	chr16:47400610-47400611	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs528240675	chr16:47400652-47400653	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs557469502	chr16:47400691-47400692	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs190698898	chr16:47400812-47400813	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
43	rs570998693	chr16:47400844-47400845	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
44	rs538279912	chr16:47400848-47400849	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
45	rs556515970	chr16:47400851-47400852	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
46	rs182575890	chr16:47400863-47400864	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
47	rs371618668	chr16:47400873-47400874	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
48	rs537359951	chr16:47400880-47400881	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a
49	rs7205849	chr16:47400887-47400888	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs376913421	chr16:47400890-47400891	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Colorectal cancer	19359472	CNVD
Olfactory neuroblastoma	18408657	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	22341455	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:4495 , 50 per page) page: 1 2 3 4 5 6 7 ... 90

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47368800-47409000	Weak transcription	HepG2	liver
2	chr16:47372000-47403200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:47372000-47426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:47379600-47432000	Weak transcription	Fetal Lung	lung
5	chr16:47379800-47404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:47380000-47409000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:47382000-47404600	Weak transcription	Aorta	Aorta
8	chr16:47382000-47426000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:47385800-47404400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr16:47387800-47429800	Weak transcription	Right Ventricle	heart
11	chr16:47388200-47404200	Weak transcription	Lung	lung
12	chr16:47388600-47414800	Weak transcription	Brain Angular Gyrus	brain
13	chr16:47388600-47445000	Weak transcription	NHEK	skin
14	chr16:47388800-47429800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr16:47389200-47404000	Weak transcription	Gastric	stomach
16	chr16:47389400-47425600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr16:47390000-47404600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:47390000-47430000	Weak transcription	HSMMtube	muscle
19	chr16:47390600-47404400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr16:47390600-47408800	Weak transcription	Small Intestine	intestine
21	chr16:47390800-47403000	Weak transcription	Primary B cells from cord blood	blood
22	chr16:47390800-47409800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr16:47392400-47399800	Weak transcription	NHLF	lung
24	chr16:47392800-47403800	Weak transcription	Fetal Intestine Small	intestine
25	chr16:47393000-47404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:47393000-47458200	Weak transcription	Pancreas	Pancrea
27	chr16:47393000-47459000	Weak transcription	NHDF-Ad	bronchial
28	chr16:47393200-47404200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr16:47393200-47407800	Weak transcription	Osteobl	bone
30	chr16:47393200-47409400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr16:47393200-47410800	Weak transcription	HMEC	breast
32	chr16:47393400-47404000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr16:47393400-47407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr16:47393600-47399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr16:47393800-47404600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr16:47394600-47403800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr16:47395000-47404000	Weak transcription	Brain Germinal Matrix	brain
38	chr16:47395000-47404200	Weak transcription	Fetal Brain Female	brain
39	chr16:47395400-47403800	Weak transcription	Thymus	Thymus
40	chr16:47395400-47404000	Weak transcription	Fetal Stomach	stomach
41	chr16:47395400-47407600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr16:47395600-47404000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr16:47395800-47404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr16:47395800-47404200	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr16:47396200-47411400	Weak transcription	A549	lung
46	chr16:47396200-47414200	Weak transcription	Psoas Muscle	Psoas
47	chr16:47396200-47425800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr16:47396400-47404200	Weak transcription	Fetal Intestine Large	intestine
49	chr16:47396400-47411200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr16:47396600-47399800	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links