Variant report

Variant	rs371618668
Chromosome Location	chr16:47400873-47400874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1060396	chr16:47264261-47469345	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv428656	chr16:47316866-47469918	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47368800-47409000	Weak transcription	HepG2	liver
2	chr16:47372000-47403200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr16:47372000-47426200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:47379600-47432000	Weak transcription	Fetal Lung	lung
5	chr16:47379800-47404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:47380000-47409000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:47382000-47404600	Weak transcription	Aorta	Aorta
8	chr16:47382000-47426000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:47385800-47404400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr16:47387800-47429800	Weak transcription	Right Ventricle	heart
11	chr16:47388200-47404200	Weak transcription	Lung	lung
12	chr16:47388600-47414800	Weak transcription	Brain Angular Gyrus	brain
13	chr16:47388600-47445000	Weak transcription	NHEK	skin
14	chr16:47388800-47429800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr16:47389200-47404000	Weak transcription	Gastric	stomach
16	chr16:47389400-47425600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr16:47390000-47404600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:47390000-47430000	Weak transcription	HSMMtube	muscle
19	chr16:47390600-47404400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr16:47390600-47408800	Weak transcription	Small Intestine	intestine
21	chr16:47390800-47403000	Weak transcription	Primary B cells from cord blood	blood
22	chr16:47390800-47409800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr16:47392800-47403800	Weak transcription	Fetal Intestine Small	intestine
24	chr16:47393000-47404200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:47393000-47458200	Weak transcription	Pancreas	Pancrea
26	chr16:47393000-47459000	Weak transcription	NHDF-Ad	bronchial
27	chr16:47393200-47404200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:47393200-47407800	Weak transcription	Osteobl	bone
29	chr16:47393200-47409400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr16:47393200-47410800	Weak transcription	HMEC	breast
31	chr16:47393400-47404000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:47393400-47407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr16:47393800-47404600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr16:47394600-47403800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr16:47395000-47404000	Weak transcription	Brain Germinal Matrix	brain
36	chr16:47395000-47404200	Weak transcription	Fetal Brain Female	brain
37	chr16:47395400-47403800	Weak transcription	Thymus	Thymus
38	chr16:47395400-47404000	Weak transcription	Fetal Stomach	stomach
39	chr16:47395400-47407600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr16:47395600-47404000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr16:47395800-47404200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:47395800-47404200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr16:47396200-47411400	Weak transcription	A549	lung
44	chr16:47396200-47414200	Weak transcription	Psoas Muscle	Psoas
45	chr16:47396200-47425800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr16:47396400-47404200	Weak transcription	Fetal Intestine Large	intestine
47	chr16:47396400-47411200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr16:47396800-47405000	Weak transcription	Colon Smooth Muscle	Colon
49	chr16:47397000-47404400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr16:47397200-47404200	Weak transcription	Primary hematopoietic stem cells	blood

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