Variant report
Variant | esv1849096 |
---|---|
Chromosome Location | chr14:80649325-80654009 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs556565836 | chr14:80652212-80652213 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
2 | rs140606619 | chr14:80652248-80652249 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs537247640 | chr14:80652251-80652252 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
4 | rs187087036 | chr14:80652310-80652311 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
5 | rs555416853 | chr14:80652349-80652350 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs150022656 | chr14:80652350-80652351 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs573889323 | chr14:80652366-80652367 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
8 | rs192206116 | chr14:80652403-80652404 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
9 | rs544268762 | chr14:80652422-80652423 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs145250896 | chr14:80652428-80652429 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
11 | rs541139177 | chr14:80652430-80652431 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs546899840 | chr14:80652437-80652438 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs34987363 | chr14:80652513-80652514 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs148866887 | chr14:80652584-80652585 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
15 | rs532407953 | chr14:80652647-80652648 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
16 | rs199646956 | chr14:80652666-80652667 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
17 | rs35973322 | chr14:80652670-80652671 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs552405244 | chr14:80652671-80652672 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs529160214 | chr14:80652697-80652698 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs184047567 | chr14:80652787-80652788 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs186055940 | chr14:80652791-80652792 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs537955683 | chr14:80652823-80652824 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs189900722 | chr14:80652839-80652840 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs182377484 | chr14:80652913-80652914 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs577960953 | chr14:80652943-80652944 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
26 | rs533551623 | chr14:80652979-80652980 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
27 | rs545182581 | chr14:80653026-80653027 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs11273272 | chr14:80653037-80653038 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs76431384 | chr14:80653038-80653039 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs201620525 | chr14:80653040-80653041 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs573465569 | chr14:80653064-80653065 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs224968 | chr14:80653076-80653077 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
33 | rs372909543 | chr14:80653112-80653113 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
34 | rs575396738 | chr14:80653113-80653114 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs143561433 | chr14:80653127-80653128 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs372776706 | chr14:80653129-80653130 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs112319172 | chr14:80653131-80653132 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs224969 | chr14:80653144-80653145 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs548976080 | chr14:80653171-80653172 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs224970 | chr14:80653179-80653180 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
41 | rs187050049 | chr14:80653185-80653186 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
42 | rs532472188 | chr14:80653225-80653226 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
43 | rs145757154 | chr14:80653253-80653254 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
44 | rs563783858 | chr14:80653281-80653282 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
45 | rs569107028 | chr14:80653289-80653290 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
46 | rs112670817 | chr14:80653295-80653296 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
47 | rs548314917 | chr14:80653301-80653302 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
48 | rs138693450 | chr14:80653313-80653314 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
49 | rs224971 | chr14:80653332-80653333 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
50 | rs150734455 | chr14:80653380-80653381 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Esophageal cancer | 21851588 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Retinoblastoma | 21504564 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Oral cancer | 21386901 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Breast cancer | 17899364 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Chronic myeloid leukemia | 20724749 | CNVD |
Wilms tumour | 21544195 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Breast cancer | 21858162 | CNVD |
Lung cancer | 18438408 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Malignant mesothelioma | 18160781 | CNVD |
Pleural malignant mesothelioma | 18160781 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Malignant fibrous histiocytomas | 21085701 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
cataract | 16735990 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Breast cancer | 16608533 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Developmental delay | 21147756 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma | 21080181 | CNVD |
Gastric cancer | 16891809 | CNVD |
Breast cancer | 17133270 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:80652200-80653800 | Enhancers | Placenta | Placenta |
2 | chr14:80653800-80654600 | Weak transcription | Placenta | Placenta |