Variant report

Variant	rs224969
Chromosome Location	chr14:80653144-80653145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10133463	0.82[EUR][1000 genomes]
rs10140980	0.82[EUR][1000 genomes]
rs10150064	0.80[ASN][1000 genomes]
rs1388378	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs170407	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs170408	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17110368	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17110449	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1907526	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs224996	0.89[EUR][1000 genomes]
rs224997	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs224999	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs225001	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs225003	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs225004	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2267872	0.84[EUR][1000 genomes]
rs28607034	0.85[EUR][1000 genomes]
rs28883971	0.81[EUR][1000 genomes]
rs54566	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56033314	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6574551	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7140952	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145153	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7145584	0.81[EUR][1000 genomes]
rs7146189	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7152836	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7154898	0.82[EUR][1000 genomes]
rs7350729	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8009555	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011716	0.81[AMR][1000 genomes]
rs9652301	0.82[EUR][1000 genomes]
rs9972105	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9972275	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1849096	chr14:80649325-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv1847058	chr14:80649565-80654009	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv1819908	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv1822485	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv1822806	chr14:80653009-80654009	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv1836042	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1844981	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv1845818	chr14:80653009-80654009	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv1846864	chr14:80653009-80654009	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv1848450	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv1851708	chr14:80653009-80654009	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv20063	chr14:80653033-80654322	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80652200-80653800	Enhancers	Placenta	Placenta

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