Variant report

Variant	rs54566
Chromosome Location	chr14:80635847-80635848
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10133463	0.81[EUR][1000 genomes]
rs10140980	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10144099	0.88[CEU][hapmap]
rs1388378	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs1491488	0.88[ASN][1000 genomes]
rs1491499	0.81[EUR][1000 genomes]
rs1491500	0.81[EUR][1000 genomes]
rs1491501	0.81[EUR][1000 genomes]
rs170407	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs170408	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110328	0.81[EUR][1000 genomes]
rs17110368	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110449	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs1907526	0.81[EUR][1000 genomes]
rs2098406	0.81[EUR][1000 genomes]
rs224969	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs224996	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs224997	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs224999	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225001	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225003	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs225004	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2267872	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs28607034	0.83[EUR][1000 genomes]
rs56033314	0.88[EUR][1000 genomes]
rs56240413	0.81[EUR][1000 genomes]
rs6574551	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs7140952	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7145153	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs7146189	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7152836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154177	0.88[CEU][hapmap]
rs7154898	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7159642	0.88[CEU][hapmap]
rs7160310	0.87[CEU][hapmap]
rs7350729	0.81[EUR][1000 genomes]
rs8009555	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs9652301	0.81[EUR][1000 genomes]
rs9972105	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs9972275	0.88[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80634600-80638600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:80635200-80636200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:80635800-80636000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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