Variant report

Variant	rs17110368
Chromosome Location	chr14:80614217-80614218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1491488	0.89[EUR][1000 genomes]
rs170407	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs170408	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110449	0.82[CHD][hapmap]
rs224969	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs224996	0.80[ASN][1000 genomes]
rs224997	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs224999	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs225001	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs225003	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs225004	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267872	0.82[CHD][hapmap]
rs54566	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56033314	0.85[ASN][1000 genomes]
rs6574551	0.86[CHD][hapmap]
rs7140952	0.80[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7152836	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009555	0.84[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17110368	KIAA1737	cis	cerebellum	SCAN
rs17110368	ZDHHC22	cis	cerebellum	SCAN
rs17110368	C14orf118	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80614000-80616200	Weak transcription	HMEC	breast
2	chr14:80614200-80616400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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