Variant report

Variant	rs7140952
Chromosome Location	chr14:80668272-80668273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10133463	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10140980	1.00[CEU][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10144099	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149527	0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs10150064	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10483947	0.84[EUR][1000 genomes]
rs1388378	1.00[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs170407	0.87[EUR][1000 genomes]
rs170408	0.86[EUR][1000 genomes]
rs17110368	0.85[ASN][1000 genomes]
rs17110449	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17110492	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17110521	0.85[EUR][1000 genomes]
rs1907526	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1955625	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2160354	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2160355	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs224969	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs224997	0.87[EUR][1000 genomes]
rs224999	0.87[EUR][1000 genomes]
rs225001	0.87[EUR][1000 genomes]
rs225003	0.87[EUR][1000 genomes]
rs225004	0.87[EUR][1000 genomes]
rs2267872	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2267873	0.81[EUR][1000 genomes]
rs2295138	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28607034	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28883971	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs54566	0.88[EUR][1000 genomes]
rs55884286	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56033314	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61989398	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6574551	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145153	1.00[CEU][hapmap];0.90[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7145584	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7146189	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7147845	0.86[AFR][1000 genomes]
rs7152836	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7154177	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs7154898	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7159642	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs7160310	1.00[CEU][hapmap]
rs7350729	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8003183	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8009555	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8011716	0.89[EUR][1000 genomes]
rs9652301	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9972105	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9972275	1.00[CEU][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80664800-80677400	Weak transcription	Esophagus	oesophagus
2	chr14:80665600-80677200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:80665800-80674000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:80667600-80669600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:80667600-80670200	Strong transcription	A549	lung
6	chr14:80667800-80669800	Strong transcription	Hela-S3	cervix

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