Variant report

Variant	rs2267873
Chromosome Location	chr14:80673814-80673815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10131076	0.87[EUR][1000 genomes]
rs10133463	0.83[EUR][1000 genomes]
rs10140980	0.83[EUR][1000 genomes]
rs10146631	0.89[EUR][1000 genomes]
rs10149251	0.89[EUR][1000 genomes]
rs10150190	0.89[EUR][1000 genomes]
rs11159454	0.88[EUR][1000 genomes]
rs11851891	0.88[EUR][1000 genomes]
rs1388378	0.85[EUR][1000 genomes]
rs17110449	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs1884071	0.88[EUR][1000 genomes]
rs1907526	0.83[EUR][1000 genomes]
rs1955625	0.81[EUR][1000 genomes]
rs2267872	0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2273173	0.88[EUR][1000 genomes]
rs28883971	0.82[EUR][1000 genomes]
rs55859799	0.90[EUR][1000 genomes]
rs56033314	0.81[EUR][1000 genomes]
rs6574551	0.91[TSI][hapmap];0.86[EUR][1000 genomes]
rs7140952	0.81[EUR][1000 genomes]
rs7141617	0.90[EUR][1000 genomes]
rs7145153	0.82[EUR][1000 genomes]
rs7145584	0.82[EUR][1000 genomes]
rs7146189	0.83[EUR][1000 genomes]
rs7154898	0.83[EUR][1000 genomes]
rs7159995	0.87[EUR][1000 genomes]
rs7350729	0.81[EUR][1000 genomes]
rs8003183	0.81[EUR][1000 genomes]
rs8009555	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9652301	0.83[EUR][1000 genomes]
rs9972105	0.83[EUR][1000 genomes]
rs9972275	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80664800-80677400	Weak transcription	Esophagus	oesophagus
2	chr14:80665600-80677200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr14:80665800-80674000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:80669800-80674800	Weak transcription	Hela-S3	cervix
5	chr14:80672800-80674000	Enhancers	Brain Hippocampus Middle	brain
6	chr14:80672800-80674600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:80673000-80674400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:80673200-80674400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:80673400-80678400	Weak transcription	Brain Germinal Matrix	brain
10	chr14:80673800-80674000	Transcr. at gene 5' and 3'	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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