Variant report

Variant	rs1884071
Chromosome Location	chr14:80744913-80744914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:80744428..80746549-chr14:80747045..80749528,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10131076	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10133463	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10140980	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10144099	0.91[ASN][1000 genomes]
rs10146631	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10149251	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10150064	0.91[ASN][1000 genomes]
rs10150190	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10483947	0.95[ASN][1000 genomes]
rs11159454	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851891	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1388378	0.91[ASN][1000 genomes]
rs17110449	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17110492	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17110521	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1907526	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1955625	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2160354	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2160355	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2267873	0.88[EUR][1000 genomes]
rs2273173	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2295138	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28607034	0.91[ASN][1000 genomes]
rs28883971	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55859799	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55884286	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61989398	0.86[ASN][1000 genomes]
rs6574551	0.90[ASN][1000 genomes]
rs7141617	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145153	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7145584	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7146189	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7154898	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7159995	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7350729	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8003183	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8009555	0.90[ASN][1000 genomes]
rs8011716	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9652301	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9972105	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9972275	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv902115	chr14:80700351-80844239	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1371	chr14:80719478-80761504	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80742600-80745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:80744000-80745200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:80744600-80745000	Enhancers	Adipose Nuclei	Adipose
4	chr14:80744600-80745000	Enhancers	Stomach Mucosa	stomach
5	chr14:80744600-80745200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:80744600-80745200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:80744600-80745200	Enhancers	NHLF	lung
8	chr14:80744800-80745000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:80744800-80745000	Enhancers	Esophagus	oesophagus
10	chr14:80744800-80745000	Enhancers	Gastric	stomach
11	chr14:80744800-80745200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:80744800-80745200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:80744800-80745200	Enhancers	Psoas Muscle	Psoas

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