Variant report

Variant	rs55884286
Chromosome Location	chr14:80742798-80742799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10131076	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10133463	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10140980	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10144099	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10146631	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10149251	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10150064	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150190	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10483947	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11159454	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11851891	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1388378	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17110449	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17110492	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17110521	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1884071	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1907526	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1955625	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2160354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2160355	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2267872	0.90[EUR][1000 genomes]
rs2273173	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2295138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28607034	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28883971	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55859799	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56033314	0.88[EUR][1000 genomes]
rs61989398	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6574551	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7140952	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7141617	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145153	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7145584	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7146189	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7154898	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7159995	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73335280	0.82[AFR][1000 genomes]
rs7350729	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003183	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8009555	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8011716	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9652301	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9972105	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9972275	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902113	chr14:80172094-80929699	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv902115	chr14:80700351-80844239	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1371	chr14:80719478-80761504	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80735400-80744800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:80737200-80744800	Weak transcription	Esophagus	oesophagus
3	chr14:80741000-80744000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:80741200-80744800	Weak transcription	Psoas Muscle	Psoas
5	chr14:80741800-80744600	Weak transcription	NHLF	lung
6	chr14:80742200-80744800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:80742200-80744800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:80742600-80745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links