Variant report
| Variant | esv1988727 |
|---|---|
| Chromosome Location | chr10:26354654-26355262 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs11014948 | chr10:26354654-26354655 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs180791095 | chr10:26354655-26354656 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs528178817 | chr10:26354659-26354660 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs11593320 | chr10:26354756-26354757 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs370642822 | chr10:26354767-26354768 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs186131166 | chr10:26354775-26354776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs192242160 | chr10:26354813-26354814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs550167809 | chr10:26354840-26354841 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs369921633 | chr10:26354842-26354843 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs570344922 | chr10:26354863-26354864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs71893961 | chr10:26354940-26354941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs55935469 | chr10:26354951-26354952 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs548776827 | chr10:26354982-26354983 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs568988564 | chr10:26354998-26354999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs535455080 | chr10:26355007-26355008 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs36041747 | chr10:26355008-26355009 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs551694663 | chr10:26355038-26355039 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs74231509 | chr10:26355073-26355074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs183233183 | chr10:26355078-26355079 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs12761327 | chr10:26355099-26355100 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 21 | rs187986864 | chr10:26355105-26355106 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs572802514 | chr10:26355141-26355142 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs577374297 | chr10:26355144-26355145 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs76903673 | chr10:26355195-26355196 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs12785093 | chr10:26355227-26355228 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 26 | rs117341455 | chr10:26355228-26355229 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs190509804 | chr10:26355229-26355230 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs12761590 | chr10:26355230-26355231 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
Variant related diseases (count:43)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26344200-26355800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr10:26352800-26358400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
