Variant report

Variant	rs11593320
Chromosome Location	chr10:26354756-26354757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10508710	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11014925	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs11014929	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs11014931	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11014932	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11014933	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11014934	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs11014935	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11014936	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11014940	1.00[CHB][hapmap]
rs11014959	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11593128	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11598861	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12243741	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12246202	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12247650	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12248210	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12248769	0.93[CHB][hapmap]
rs12249006	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12252546	0.86[JPT][hapmap]
rs12252825	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12253015	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12260321	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs12261502	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12262670	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12263561	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12263990	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12263998	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12265882	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12267071	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs12267078	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12267297	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12569739	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12572400	0.86[CHB][hapmap]
rs12765553	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12765561	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12766250	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs12766929	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs12767114	0.93[CHB][hapmap];0.84[JPT][hapmap]
rs12767805	1.00[CHB][hapmap]
rs12768879	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12770421	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12770526	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12770618	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12771164	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12771414	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12773856	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs12774270	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs12776584	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs12780744	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs12781790	0.92[JPT][hapmap]
rs12784683	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1339808	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1339809	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1339810	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1339812	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs1339814	0.86[CHB][hapmap]
rs1339815	0.80[CHB][hapmap]
rs1339816	0.86[CHB][hapmap]
rs1402436	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1402437	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1416860	0.86[CHB][hapmap]
rs1521029	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1521030	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1521032	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1521033	1.00[CHB][hapmap]
rs1521034	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1546701	0.93[CHB][hapmap]
rs1546702	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1591906	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs17739106	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs17739425	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs17813720	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2090797	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs2139795	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2176937	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs2368120	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs2368157	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs34879813	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3758441	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3758443	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs3758444	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs3817419	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs3824700	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4313469	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4378287	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs4581343	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs4581344	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs4626968	0.87[JPT][hapmap]
rs4631780	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs5012431	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7073081	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7084483	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7095668	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7095982	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7096274	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7097387	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7893838	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7894273	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs7894301	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7895318	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7898544	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7899450	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7899567	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs7899880	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7910497	0.92[CHB][hapmap]
rs7911700	0.80[JPT][hapmap]
rs7912435	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7913502	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs7913733	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7915315	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7916320	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7917879	0.93[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1798878	chr10:26339336-26355576	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
3	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv13963	chr10:26345494-26361303	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3340579	chr10:26354071-26356094	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv2568953	chr10:26354124-26355620	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2215082	chr10:26354575-26355175	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3482840	chr10:26354639-26355174	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1988727	chr10:26354654-26355262	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3516478	chr10:26354657-26355173	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3516477	chr10:26354658-26355190	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3713	chr10:26354666-26355127	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3482951	chr10:26354686-26355143	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3482729	chr10:26354689-26355139	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3324503	chr10:26354693-26355118	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3482618	chr10:26354701-26355092	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3483062	chr10:26354701-26355092	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	esv3516476	chr10:26354708-26355120	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv3516479	chr10:26354756-26355074	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26352800-26358400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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