Variant report

Variant	rs12252546
Chromosome Location	chr10:26243603-26243604
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 283 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:281)

rs_ID	r²[population]
rs10508710	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10828898	0.88[ASN][1000 genomes]
rs10828899	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828900	0.86[ASN][1000 genomes]
rs10828945	0.88[ASN][1000 genomes]
rs10828946	0.88[ASN][1000 genomes]
rs10828953	0.81[ASN][1000 genomes]
rs11014834	0.84[ASN][1000 genomes]
rs11014901	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11014923	0.85[ASN][1000 genomes]
rs11014924	0.92[ASN][1000 genomes]
rs11014925	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11014928	0.89[ASN][1000 genomes]
rs11014929	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014931	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014932	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014933	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014934	0.87[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs11014935	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014936	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs11014938	0.89[ASN][1000 genomes]
rs11014939	0.89[ASN][1000 genomes]
rs11014940	0.89[ASN][1000 genomes]
rs11014944	0.88[ASN][1000 genomes]
rs11014945	0.88[ASN][1000 genomes]
rs11014947	0.88[ASN][1000 genomes]
rs11014948	0.88[ASN][1000 genomes]
rs11014951	0.84[ASN][1000 genomes]
rs11014959	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs11593128	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs11593320	0.86[JPT][hapmap]
rs11595393	0.88[ASN][1000 genomes]
rs11598861	0.84[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11598907	0.81[ASN][1000 genomes]
rs11812518	0.83[ASN][1000 genomes]
rs11814295	0.89[ASN][1000 genomes]
rs12240279	0.89[ASN][1000 genomes]
rs12241851	0.89[ASN][1000 genomes]
rs12242258	0.89[ASN][1000 genomes]
rs12242396	0.89[ASN][1000 genomes]
rs12243741	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12244889	0.88[ASN][1000 genomes]
rs12246202	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12247318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247598	0.84[ASN][1000 genomes]
rs12247650	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12248210	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12248769	0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs12249006	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12252534	0.90[ASN][1000 genomes]
rs12252825	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12253015	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12258431	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12260321	0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12261502	0.84[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12262265	0.86[ASN][1000 genomes]
rs12262670	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12263561	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12263812	0.85[ASN][1000 genomes]
rs12263847	0.89[ASN][1000 genomes]
rs12263885	0.87[ASN][1000 genomes]
rs12263990	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12263998	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12264250	0.89[ASN][1000 genomes]
rs12265882	0.94[JPT][hapmap]
rs12266221	0.92[ASN][1000 genomes]
rs12267071	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs12267078	0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs12267297	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12569363	0.88[ASN][1000 genomes]
rs12569739	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12570534	0.88[ASN][1000 genomes]
rs12572400	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12572695	0.93[ASN][1000 genomes]
rs12761327	0.88[ASN][1000 genomes]
rs12761590	0.88[ASN][1000 genomes]
rs12764282	0.85[EUR][1000 genomes]
rs12765553	0.90[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12765561	0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12766250	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs12766929	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs12767114	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12767568	0.81[ASN][1000 genomes]
rs12767805	0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs12768268	0.93[ASN][1000 genomes]
rs12768299	0.85[ASN][1000 genomes]
rs12768454	0.84[ASN][1000 genomes]
rs12768754	0.87[ASN][1000 genomes]
rs12768879	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12768930	0.88[ASN][1000 genomes]
rs12769263	0.88[ASN][1000 genomes]
rs12770421	0.83[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs12770526	0.94[JPT][hapmap]
rs12770618	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12771164	0.94[JPT][hapmap]
rs12771414	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12772112	0.87[ASN][1000 genomes]
rs12772553	0.88[ASN][1000 genomes]
rs12773390	0.88[ASN][1000 genomes]
rs12773513	0.90[ASN][1000 genomes]
rs12773856	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12774270	0.90[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12774885	0.81[ASN][1000 genomes]
rs12774889	0.88[ASN][1000 genomes]
rs12774892	0.81[ASN][1000 genomes]
rs12775228	0.87[ASN][1000 genomes]
rs12775359	0.85[ASN][1000 genomes]
rs12775421	0.88[ASN][1000 genomes]
rs12775972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12776584	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs12776958	0.87[ASN][1000 genomes]
rs12777006	0.85[ASN][1000 genomes]
rs12779671	0.88[ASN][1000 genomes]
rs12780744	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12781392	0.85[ASN][1000 genomes]
rs12781790	0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs12784526	0.89[ASN][1000 genomes]
rs12784683	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs12784717	0.89[ASN][1000 genomes]
rs12784877	0.89[ASN][1000 genomes]
rs12785093	0.88[ASN][1000 genomes]
rs12785116	0.88[ASN][1000 genomes]
rs1339808	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1339809	0.82[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1339810	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1339812	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1339813	0.88[ASN][1000 genomes]
rs1339814	0.87[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs1339815	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1339816	0.87[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1361376	0.93[ASN][1000 genomes]
rs1402436	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs1402437	0.80[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1416860	0.87[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs1521029	0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1521030	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1521031	0.88[ASN][1000 genomes]
rs1521032	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs1521033	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs1521034	0.94[JPT][hapmap]
rs1539323	0.86[ASN][1000 genomes]
rs1546701	0.83[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs1546702	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1578218	0.89[ASN][1000 genomes]
rs1591906	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17665883	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17666079	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs17666328	0.89[ASN][1000 genomes]
rs17666400	0.89[ASN][1000 genomes]
rs17666458	0.85[ASN][1000 genomes]
rs17666471	0.88[ASN][1000 genomes]
rs17666495	0.88[ASN][1000 genomes]
rs17666501	0.88[ASN][1000 genomes]
rs17738967	0.89[ASN][1000 genomes]
rs17738985	0.89[ASN][1000 genomes]
rs17739106	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs17739425	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs17813720	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1818747	0.85[ASN][1000 genomes]
rs1856603	0.93[ASN][1000 genomes]
rs1915478	0.93[ASN][1000 genomes]
rs1949616	0.91[ASN][1000 genomes]
rs2090797	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs2139795	0.94[JPT][hapmap]
rs2176937	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs2176942	0.88[ASN][1000 genomes]
rs2368120	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs2368157	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs34089187	0.89[ASN][1000 genomes]
rs34135459	0.87[ASN][1000 genomes]
rs34311739	0.89[ASN][1000 genomes]
rs34353852	0.89[ASN][1000 genomes]
rs34457588	0.88[ASN][1000 genomes]
rs34474695	0.88[ASN][1000 genomes]
rs34558407	0.86[ASN][1000 genomes]
rs34580592	0.84[ASN][1000 genomes]
rs34756309	0.88[ASN][1000 genomes]
rs34832963	0.83[ASN][1000 genomes]
rs34834344	0.88[ASN][1000 genomes]
rs34879813	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs34967200	0.84[ASN][1000 genomes]
rs35000419	0.89[ASN][1000 genomes]
rs35137356	0.85[ASN][1000 genomes]
rs35158540	0.89[ASN][1000 genomes]
rs35177483	0.88[ASN][1000 genomes]
rs35251452	0.89[ASN][1000 genomes]
rs35616188	0.87[ASN][1000 genomes]
rs35636005	0.88[ASN][1000 genomes]
rs35769796	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35853372	0.81[ASN][1000 genomes]
rs36024300	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758441	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3758443	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3758444	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3817417	0.87[ASN][1000 genomes]
rs3817418	0.88[ASN][1000 genomes]
rs3817419	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3817421	0.88[ASN][1000 genomes]
rs3824695	0.88[ASN][1000 genomes]
rs3824696	0.88[ASN][1000 genomes]
rs3824700	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs3824701	0.88[ASN][1000 genomes]
rs3824702	0.88[ASN][1000 genomes]
rs3824703	0.88[ASN][1000 genomes]
rs3824704	0.88[ASN][1000 genomes]
rs3824705	0.88[ASN][1000 genomes]
rs4313469	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4378287	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4548528	0.88[ASN][1000 genomes]
rs4581343	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4581344	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4626968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4631780	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs4998836	0.88[ASN][1000 genomes]
rs4998838	0.88[ASN][1000 genomes]
rs4998839	0.88[ASN][1000 genomes]
rs4998840	0.88[ASN][1000 genomes]
rs5012431	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs55752594	0.85[ASN][1000 genomes]
rs56011042	0.88[ASN][1000 genomes]
rs56403024	0.88[ASN][1000 genomes]
rs57335787	0.85[ASN][1000 genomes]
rs58217723	0.88[ASN][1000 genomes]
rs59180311	0.89[ASN][1000 genomes]
rs59764643	0.87[ASN][1000 genomes]
rs61840796	0.85[ASN][1000 genomes]
rs61840797	0.85[ASN][1000 genomes]
rs61840798	0.88[ASN][1000 genomes]
rs61840836	0.85[ASN][1000 genomes]
rs61846589	0.88[ASN][1000 genomes]
rs61846590	0.88[ASN][1000 genomes]
rs61849336	0.89[ASN][1000 genomes]
rs61849337	0.83[ASN][1000 genomes]
rs61849338	0.83[ASN][1000 genomes]
rs61849340	0.87[ASN][1000 genomes]
rs61849342	0.81[ASN][1000 genomes]
rs61849343	0.88[ASN][1000 genomes]
rs61849344	0.88[ASN][1000 genomes]
rs6482528	0.89[ASN][1000 genomes]
rs66657341	0.86[ASN][1000 genomes]
rs67216996	0.87[ASN][1000 genomes]
rs7073081	0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7074453	0.88[ASN][1000 genomes]
rs7081905	0.80[CEU][hapmap]
rs7084483	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7084885	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7086207	0.86[ASN][1000 genomes]
rs7095515	0.88[ASN][1000 genomes]
rs7095668	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7095982	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7096274	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7097387	0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7097468	0.88[ASN][1000 genomes]
rs71492528	0.84[ASN][1000 genomes]
rs73610386	0.87[ASN][1000 genomes]
rs7476863	0.88[ASN][1000 genomes]
rs7893838	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7894273	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7894301	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7895318	0.80[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap]
rs7898544	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7899450	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7899567	0.87[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7899880	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7903913	0.87[ASN][1000 genomes]
rs7904870	0.82[ASN][1000 genomes]
rs7905428	0.84[ASN][1000 genomes]
rs7906251	0.83[ASN][1000 genomes]
rs7910497	0.87[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs7911700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912435	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7913502	0.80[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7913733	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7914972	0.88[ASN][1000 genomes]
rs7915315	0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs7916320	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7917879	0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7922301	0.82[ASN][1000 genomes]
rs7922392	0.82[ASN][1000 genomes]
rs949896	0.93[ASN][1000 genomes]
rs9629915	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26242400-26243800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26242600-26245800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26243200-26245800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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