Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26178024..26180350-chr10:26180527..26183342,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10828898	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828899	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828900	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014834	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014925	0.81[ASN][1000 genomes]
rs12247318	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12247650	0.81[ASN][1000 genomes]
rs12252546	0.87[ASN][1000 genomes]
rs12258431	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572695	0.81[ASN][1000 genomes]
rs12764282	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12766250	0.81[ASN][1000 genomes]
rs12768268	0.81[ASN][1000 genomes]
rs1339808	0.81[ASN][1000 genomes]
rs1339809	0.81[ASN][1000 genomes]
rs1339812	0.81[ASN][1000 genomes]
rs17665883	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34399158	0.82[ASN][1000 genomes]
rs4626968	0.85[ASN][1000 genomes]
rs7084885	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7086207	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905428	0.97[ASN][1000 genomes]
rs7911700	0.83[ASN][1000 genomes]
rs7922301	0.95[ASN][1000 genomes]
rs7922392	0.95[ASN][1000 genomes]
rs949896	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv19878	chr10:26180284-26183269	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26178800-26184800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:26180800-26184800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:26181000-26185600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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