Variant report

Variant	rs12764282
Chromosome Location	chr10:26192104-26192105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10828898	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828899	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10828900	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11014834	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014901	0.81[EUR][1000 genomes]
rs12247318	0.87[EUR][1000 genomes]
rs12252546	0.85[EUR][1000 genomes]
rs12258431	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12775972	0.81[EUR][1000 genomes]
rs17665883	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4626968	0.84[EUR][1000 genomes]
rs7084885	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7086207	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7903913	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7905428	0.82[ASN][1000 genomes]
rs7911700	0.81[EUR][1000 genomes]
rs7922301	0.82[ASN][1000 genomes]
rs7922392	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26188600-26197000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:26189000-26193200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26189600-26193800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26190600-26196400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:26190800-26196200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:26191400-26193800	Enhancers	Primary B cells from cord blood	blood
7	chr10:26191600-26192600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:26191600-26194400	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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