Variant report

Variant	rs10828899
Chromosome Location	chr10:26186577-26186578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10508710	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs10828898	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10828900	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11014834	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014924	0.81[ASN][1000 genomes]
rs11014925	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014929	0.93[JPT][hapmap]
rs11014931	0.81[GIH][hapmap];0.89[JPT][hapmap]
rs11014932	0.94[JPT][hapmap]
rs11014933	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs11014934	0.92[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs11014935	0.88[JPT][hapmap]
rs11014936	0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs11593128	0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs11593320	0.86[JPT][hapmap]
rs12243741	0.94[JPT][hapmap]
rs12246202	0.86[CHD][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap]
rs12247318	0.84[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12247650	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs12248210	0.89[JPT][hapmap]
rs12248769	0.86[JPT][hapmap]
rs12249006	0.88[JPT][hapmap]
rs12252546	0.83[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12252825	0.89[JPT][hapmap]
rs12253015	0.89[JPT][hapmap]
rs12258431	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12260321	0.88[JPT][hapmap]
rs12261502	0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs12262670	0.92[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs12263561	0.89[JPT][hapmap]
rs12263998	0.89[JPT][hapmap]
rs12267071	0.87[JPT][hapmap]
rs12267078	0.89[JPT][hapmap]
rs12267297	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs12572400	0.86[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap]
rs12572695	0.82[ASN][1000 genomes]
rs12764282	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12765553	0.89[JPT][hapmap]
rs12765561	0.88[JPT][hapmap]
rs12766250	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs12766929	0.88[JPT][hapmap]
rs12767114	0.93[JPT][hapmap]
rs12767805	0.91[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap]
rs12768268	0.82[ASN][1000 genomes]
rs12768879	0.89[JPT][hapmap]
rs12770421	0.83[JPT][hapmap]
rs12770526	0.89[JPT][hapmap]
rs12770618	0.88[JPT][hapmap]
rs12771414	0.89[JPT][hapmap]
rs12773856	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs12775972	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs12776584	0.89[JPT][hapmap]
rs12780744	0.87[JPT][hapmap]
rs12781790	0.93[JPT][hapmap]
rs12784683	0.88[JPT][hapmap]
rs1339808	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1339809	0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.82[ASN][1000 genomes]
rs1339810	0.89[JPT][hapmap]
rs1339812	0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1339814	0.86[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap]
rs1339815	0.83[JPT][hapmap]
rs1339816	0.86[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap];0.80[MEX][hapmap]
rs1361376	0.81[ASN][1000 genomes]
rs1402436	0.89[JPT][hapmap]
rs1416860	0.86[CHD][hapmap];0.80[MEX][hapmap]
rs1521029	0.91[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap]
rs1521030	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs1521032	0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs1521033	0.88[CHD][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap]
rs1546701	0.88[CHD][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap]
rs1546702	0.89[JPT][hapmap]
rs1591906	0.89[JPT][hapmap]
rs17665883	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17666079	0.91[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs17739106	0.83[JPT][hapmap]
rs17813720	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1856603	0.81[ASN][1000 genomes]
rs1915478	0.81[ASN][1000 genomes]
rs2090797	0.89[JPT][hapmap]
rs2176937	0.89[JPT][hapmap]
rs2368120	0.88[JPT][hapmap]
rs34399158	0.81[ASN][1000 genomes]
rs34879813	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs3758441	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs3758443	0.89[JPT][hapmap]
rs3758444	0.89[JPT][hapmap]
rs3817419	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs3824700	0.92[CHD][hapmap];0.89[JPT][hapmap]
rs4313469	0.89[JPT][hapmap]
rs4378287	0.94[JPT][hapmap]
rs4581343	0.89[JPT][hapmap]
rs4581344	0.88[JPT][hapmap]
rs4626968	0.83[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4631780	0.91[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs5012431	0.92[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs7073081	0.89[JPT][hapmap]
rs7084483	0.89[JPT][hapmap]
rs7084885	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7086207	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7095668	0.89[JPT][hapmap]
rs7095982	0.88[JPT][hapmap]
rs7096274	0.94[JPT][hapmap]
rs7097387	0.92[CHD][hapmap];0.89[JPT][hapmap]
rs7893838	0.89[JPT][hapmap]
rs7894273	0.89[JPT][hapmap]
rs7894301	0.87[JPT][hapmap]
rs7898544	0.88[JPT][hapmap]
rs7899450	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs7899567	0.91[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.80[MEX][hapmap];0.81[ASN][1000 genomes]
rs7903913	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905428	0.95[ASN][1000 genomes]
rs7910497	0.86[JPT][hapmap]
rs7911700	0.88[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs7915315	0.87[JPT][hapmap]
rs7916320	0.89[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap]
rs7917879	0.88[JPT][hapmap]
rs7922301	0.93[ASN][1000 genomes]
rs7922392	0.93[ASN][1000 genomes]
rs949896	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26184600-26186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26185000-26186800	Enhancers	Brain Germinal Matrix	brain
3	chr10:26185600-26188200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:26185800-26188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:26186000-26188000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:26186200-26187200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:26186400-26187600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:26186400-26188000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:26186400-26188000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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