Variant report

Variant	rs17739425
Chromosome Location	chr10:26417531-26417532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 296 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:295)

rs_ID	r²[population]
rs10082469	0.92[ASN][1000 genomes]
rs10508710	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10828945	0.84[ASN][1000 genomes]
rs10828946	0.84[ASN][1000 genomes]
rs10828953	0.97[ASN][1000 genomes]
rs10828955	0.91[EUR][1000 genomes]
rs11014924	0.84[ASN][1000 genomes]
rs11014925	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11014928	0.82[ASN][1000 genomes]
rs11014929	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014931	0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014932	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014933	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014934	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs11014935	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014936	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014938	0.82[ASN][1000 genomes]
rs11014939	0.82[ASN][1000 genomes]
rs11014940	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11014944	0.84[ASN][1000 genomes]
rs11014945	0.84[ASN][1000 genomes]
rs11014947	0.84[ASN][1000 genomes]
rs11014948	0.84[ASN][1000 genomes]
rs11014951	0.88[ASN][1000 genomes]
rs11014959	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11014976	1.00[CEU][hapmap];0.87[YRI][hapmap];0.96[EUR][1000 genomes]
rs11593128	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11593320	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11595393	0.84[ASN][1000 genomes]
rs11598861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11598907	0.89[CHB][hapmap];0.83[CHD][hapmap]
rs11812518	0.89[ASN][1000 genomes]
rs11814295	0.81[ASN][1000 genomes]
rs11819592	0.95[ASN][1000 genomes]
rs12240279	0.82[ASN][1000 genomes]
rs12241851	0.82[ASN][1000 genomes]
rs12242258	0.82[ASN][1000 genomes]
rs12242396	0.82[ASN][1000 genomes]
rs12243741	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12244889	0.84[ASN][1000 genomes]
rs12246202	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs12247318	0.90[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap]
rs12247598	0.88[ASN][1000 genomes]
rs12247650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12247680	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12248210	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12248769	0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12249006	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12252534	0.86[ASN][1000 genomes]
rs12252546	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12252825	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12253015	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12258453	0.85[GIH][hapmap];0.85[MKK][hapmap]
rs12260321	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12261502	0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12262265	0.81[ASN][1000 genomes]
rs12262670	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs12263561	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12263812	0.81[ASN][1000 genomes]
rs12263847	0.81[ASN][1000 genomes]
rs12263885	0.81[ASN][1000 genomes]
rs12263990	0.80[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.98[ASN][1000 genomes]
rs12263998	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12264250	0.82[ASN][1000 genomes]
rs12265882	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12266221	0.86[ASN][1000 genomes]
rs12266309	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12267071	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12267078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12267297	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12411554	1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs12569363	0.84[ASN][1000 genomes]
rs12569739	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12570534	0.84[ASN][1000 genomes]
rs12572400	0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.81[ASN][1000 genomes]
rs12572695	0.84[ASN][1000 genomes]
rs12761327	0.84[ASN][1000 genomes]
rs12761590	0.84[ASN][1000 genomes]
rs12765553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12765561	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12766250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12766929	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12767114	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12767805	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs12768268	0.84[ASN][1000 genomes]
rs12768299	0.83[ASN][1000 genomes]
rs12768454	0.81[ASN][1000 genomes]
rs12768754	0.83[ASN][1000 genomes]
rs12768879	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12768930	0.84[ASN][1000 genomes]
rs12769263	0.84[ASN][1000 genomes]
rs12770421	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12770526	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12770618	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12771164	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12771414	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12772112	0.85[ASN][1000 genomes]
rs12772392	0.91[ASN][1000 genomes]
rs12772553	0.84[ASN][1000 genomes]
rs12773390	0.84[ASN][1000 genomes]
rs12773513	0.81[ASN][1000 genomes]
rs12773856	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12774270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12774889	0.84[ASN][1000 genomes]
rs12775228	0.83[ASN][1000 genomes]
rs12775359	0.83[ASN][1000 genomes]
rs12775421	0.84[ASN][1000 genomes]
rs12775972	0.90[CHB][hapmap]
rs12776584	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12776958	0.83[ASN][1000 genomes]
rs12777006	0.86[ASN][1000 genomes]
rs12779671	0.84[ASN][1000 genomes]
rs12780744	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12781790	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12784526	0.82[ASN][1000 genomes]
rs12784683	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12784717	0.82[ASN][1000 genomes]
rs12784877	0.82[ASN][1000 genomes]
rs12785093	0.84[ASN][1000 genomes]
rs12785116	0.84[ASN][1000 genomes]
rs1339808	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1339809	0.95[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[ASN][1000 genomes]
rs1339810	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1339812	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.84[ASN][1000 genomes]
rs1339813	0.81[ASN][1000 genomes]
rs1339814	0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1339815	0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs1339816	0.94[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.80[ASN][1000 genomes]
rs1361376	0.85[ASN][1000 genomes]
rs1402436	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1402437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1402438	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1416860	0.94[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.80[ASN][1000 genomes]
rs1521029	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1521030	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1521031	0.84[ASN][1000 genomes]
rs1521032	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1521033	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1521034	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1539323	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1546701	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs1546702	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1578218	0.82[ASN][1000 genomes]
rs1591906	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs17666079	0.85[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs17666328	0.82[ASN][1000 genomes]
rs17666400	0.82[ASN][1000 genomes]
rs17666458	0.82[ASN][1000 genomes]
rs17666471	0.84[ASN][1000 genomes]
rs17666495	0.84[ASN][1000 genomes]
rs17666501	0.84[ASN][1000 genomes]
rs17738967	0.82[ASN][1000 genomes]
rs17738985	0.82[ASN][1000 genomes]
rs17739106	0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17813720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1818747	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1856603	0.85[ASN][1000 genomes]
rs1915478	0.85[ASN][1000 genomes]
rs1935484	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[LWK][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs1949616	0.84[ASN][1000 genomes]
rs2051000	0.95[ASN][1000 genomes]
rs2090797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2096176	0.87[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2139795	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2176937	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2176940	0.95[ASN][1000 genomes]
rs2176941	0.98[ASN][1000 genomes]
rs2176942	0.84[ASN][1000 genomes]
rs2226129	0.97[EUR][1000 genomes]
rs2368120	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2368157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2368158	0.87[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34089187	0.82[ASN][1000 genomes]
rs34135459	0.83[ASN][1000 genomes]
rs34311739	0.82[ASN][1000 genomes]
rs34353852	0.82[ASN][1000 genomes]
rs34457588	0.84[ASN][1000 genomes]
rs34474695	0.84[ASN][1000 genomes]
rs34580592	0.81[ASN][1000 genomes]
rs34756309	0.81[ASN][1000 genomes]
rs34832963	0.89[ASN][1000 genomes]
rs34834344	0.84[ASN][1000 genomes]
rs34879813	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34967200	0.81[ASN][1000 genomes]
rs35000419	0.82[ASN][1000 genomes]
rs35137356	0.93[ASN][1000 genomes]
rs35158540	0.82[ASN][1000 genomes]
rs35177483	0.84[ASN][1000 genomes]
rs35251452	0.82[ASN][1000 genomes]
rs35311015	0.80[ASN][1000 genomes]
rs35616188	0.83[ASN][1000 genomes]
rs35628321	0.85[ASN][1000 genomes]
rs35636005	0.84[ASN][1000 genomes]
rs3740231	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs3740232	0.85[GIH][hapmap]
rs3758441	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3758443	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3758444	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3758447	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs3758449	0.98[GIH][hapmap]
rs3817417	0.83[ASN][1000 genomes]
rs3817418	0.84[ASN][1000 genomes]
rs3817419	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3817421	0.84[ASN][1000 genomes]
rs3824695	0.84[ASN][1000 genomes]
rs3824696	0.84[ASN][1000 genomes]
rs3824700	0.89[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3824701	0.84[ASN][1000 genomes]
rs3824702	0.84[ASN][1000 genomes]
rs3824703	0.84[ASN][1000 genomes]
rs3824704	0.84[ASN][1000 genomes]
rs3824705	0.84[ASN][1000 genomes]
rs4313469	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4378287	0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4548528	0.84[ASN][1000 genomes]
rs4548529	0.86[ASN][1000 genomes]
rs4575167	0.97[EUR][1000 genomes]
rs4581343	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4581344	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4626968	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4631780	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4998836	0.84[ASN][1000 genomes]
rs4998838	0.84[ASN][1000 genomes]
rs4998839	0.84[ASN][1000 genomes]
rs4998840	0.84[ASN][1000 genomes]
rs5012431	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs55752594	0.82[ASN][1000 genomes]
rs56011042	0.84[ASN][1000 genomes]
rs56403024	0.84[ASN][1000 genomes]
rs57335787	0.82[ASN][1000 genomes]
rs58217723	0.84[ASN][1000 genomes]
rs59180311	0.82[ASN][1000 genomes]
rs59764643	0.83[ASN][1000 genomes]
rs61840796	0.83[ASN][1000 genomes]
rs61840797	0.81[ASN][1000 genomes]
rs61840798	0.84[ASN][1000 genomes]
rs61840836	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61846589	0.84[ASN][1000 genomes]
rs61846590	0.84[ASN][1000 genomes]
rs61849336	0.85[ASN][1000 genomes]
rs61849337	0.81[ASN][1000 genomes]
rs61849338	0.81[ASN][1000 genomes]
rs61849340	0.83[ASN][1000 genomes]
rs61849343	0.84[ASN][1000 genomes]
rs61849344	0.84[ASN][1000 genomes]
rs6482528	0.82[ASN][1000 genomes]
rs6482531	0.98[GIH][hapmap]
rs6482532	1.00[CEU][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs66657341	0.82[ASN][1000 genomes]
rs67216996	0.83[ASN][1000 genomes]
rs7068611	0.86[ASN][1000 genomes]
rs7068633	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7073081	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7074453	0.82[ASN][1000 genomes]
rs7080516	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084000	0.97[EUR][1000 genomes]
rs7084483	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7085103	0.87[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.95[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7091566	0.87[CEU][hapmap];0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7093989	1.00[CEU][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7095515	0.84[ASN][1000 genomes]
rs7095559	0.83[GIH][hapmap];0.85[MKK][hapmap]
rs7095668	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7095982	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7096274	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7097387	0.90[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7097468	0.84[ASN][1000 genomes]
rs73610386	0.83[ASN][1000 genomes]
rs7893838	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7894273	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7894301	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7895318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7895734	0.95[ASN][1000 genomes]
rs7898544	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7899450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7899567	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.85[ASN][1000 genomes]
rs7899880	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7901158	0.84[ASN][1000 genomes]
rs7903895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7904870	0.89[ASN][1000 genomes]
rs7906251	0.89[ASN][1000 genomes]
rs7907187	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7908466	0.93[ASN][1000 genomes]
rs7910497	0.93[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7911700	0.90[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs7912435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7913502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7913733	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7914972	0.81[ASN][1000 genomes]
rs7915315	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7916320	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7917879	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7921390	0.95[ASN][1000 genomes]
rs949896	0.84[ASN][1000 genomes]
rs9629915	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26410200-26425000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26416400-26418000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:26417000-26417600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:26417000-26417600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:26417000-26417800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:26417200-26417800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links