Variant report

Variant	rs12247680
Chromosome Location	chr10:26428780-26428781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10082469	0.98[ASN][1000 genomes]
rs10828953	0.91[ASN][1000 genomes]
rs10828955	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11014951	0.84[ASN][1000 genomes]
rs11014959	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014976	0.95[EUR][1000 genomes]
rs11598861	0.91[ASN][1000 genomes]
rs11812518	0.85[ASN][1000 genomes]
rs11819592	0.99[ASN][1000 genomes]
rs12246202	0.86[ASN][1000 genomes]
rs12247598	0.84[ASN][1000 genomes]
rs12252534	0.81[ASN][1000 genomes]
rs12261502	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12263990	0.92[ASN][1000 genomes]
rs12265882	0.90[ASN][1000 genomes]
rs12266221	0.80[ASN][1000 genomes]
rs12266309	0.95[EUR][1000 genomes]
rs12267078	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12411554	0.95[EUR][1000 genomes]
rs12569739	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12767114	0.81[ASN][1000 genomes]
rs12770421	0.81[ASN][1000 genomes]
rs12771164	0.95[ASN][1000 genomes]
rs12772112	0.81[ASN][1000 genomes]
rs12772392	0.95[ASN][1000 genomes]
rs12774270	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12777006	0.82[ASN][1000 genomes]
rs1402437	0.91[ASN][1000 genomes]
rs1402438	0.90[ASN][1000 genomes]
rs1521033	0.86[ASN][1000 genomes]
rs1521034	0.91[ASN][1000 genomes]
rs1539323	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1546701	0.86[ASN][1000 genomes]
rs1546702	0.85[ASN][1000 genomes]
rs17666079	0.80[EUR][1000 genomes]
rs17739425	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1818747	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935484	0.95[EUR][1000 genomes]
rs2051000	0.91[ASN][1000 genomes]
rs2090797	0.86[ASN][1000 genomes]
rs2096176	0.96[EUR][1000 genomes]
rs2139795	0.91[ASN][1000 genomes]
rs2176937	0.85[ASN][1000 genomes]
rs2176940	0.91[ASN][1000 genomes]
rs2176941	0.92[ASN][1000 genomes]
rs2226129	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2368157	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368158	0.96[EUR][1000 genomes]
rs34832963	0.85[ASN][1000 genomes]
rs34879813	0.81[ASN][1000 genomes]
rs35137356	0.88[ASN][1000 genomes]
rs35628321	0.89[ASN][1000 genomes]
rs3740231	0.95[EUR][1000 genomes]
rs3758447	0.95[EUR][1000 genomes]
rs4548529	0.90[ASN][1000 genomes]
rs4575167	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs61840836	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61849336	0.81[ASN][1000 genomes]
rs6482532	0.95[EUR][1000 genomes]
rs7068611	0.88[ASN][1000 genomes]
rs7068633	0.96[ASN][1000 genomes]
rs7079780	0.83[AFR][1000 genomes]
rs7080516	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081905	0.82[AFR][1000 genomes]
rs7084000	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7085103	0.96[EUR][1000 genomes]
rs7091566	0.96[EUR][1000 genomes]
rs7093989	0.96[EUR][1000 genomes]
rs7894273	0.86[ASN][1000 genomes]
rs7895318	0.99[ASN][1000 genomes]
rs7895734	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7898544	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7899880	0.88[ASN][1000 genomes]
rs7901158	0.80[ASN][1000 genomes]
rs7903895	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904870	0.85[ASN][1000 genomes]
rs7906251	0.85[ASN][1000 genomes]
rs7907187	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7908466	0.97[ASN][1000 genomes]
rs7912435	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7913502	0.91[ASN][1000 genomes]
rs7913733	0.88[ASN][1000 genomes]
rs7916320	0.86[ASN][1000 genomes]
rs7921390	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26428000-26436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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