Variant report

Variant	rs10082469
Chromosome Location	chr10:26428315-26428316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10508714	0.90[EUR][1000 genomes]
rs10764598	0.95[EUR][1000 genomes]
rs10828953	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014924	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014925	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11014934	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11014951	0.82[ASN][1000 genomes]
rs11014959	0.88[ASN][1000 genomes]
rs11014979	0.94[EUR][1000 genomes]
rs11014984	0.95[EUR][1000 genomes]
rs11593041	0.95[EUR][1000 genomes]
rs11598861	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11812518	0.83[ASN][1000 genomes]
rs11819592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12246202	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12247598	0.82[ASN][1000 genomes]
rs12247650	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12247680	0.98[ASN][1000 genomes]
rs12252534	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12258401	0.95[EUR][1000 genomes]
rs12258453	0.95[EUR][1000 genomes]
rs12261502	0.86[ASN][1000 genomes]
rs12262670	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12262728	0.95[EUR][1000 genomes]
rs12263990	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12265882	0.88[ASN][1000 genomes]
rs12266221	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12267297	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12569739	0.89[ASN][1000 genomes]
rs12572400	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12572695	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12766250	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12768268	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12770421	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12771164	0.93[ASN][1000 genomes]
rs12772392	0.97[ASN][1000 genomes]
rs12774270	0.88[ASN][1000 genomes]
rs12777006	0.81[ASN][1000 genomes]
rs1339808	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1339809	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1339812	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1339813	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1339814	0.91[EUR][1000 genomes]
rs1339815	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1339816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1342320	0.95[EUR][1000 genomes]
rs1361376	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1402437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1402438	0.88[ASN][1000 genomes]
rs1416860	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1521033	0.85[ASN][1000 genomes]
rs1521034	0.89[ASN][1000 genomes]
rs1539323	0.84[ASN][1000 genomes]
rs1546701	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1546702	0.83[ASN][1000 genomes]
rs17739425	0.92[ASN][1000 genomes]
rs17813720	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1818747	0.84[ASN][1000 genomes]
rs1856603	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1915478	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1949616	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2051000	0.89[ASN][1000 genomes]
rs2090797	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2139795	0.89[ASN][1000 genomes]
rs2176937	0.83[ASN][1000 genomes]
rs2176940	0.89[ASN][1000 genomes]
rs2176941	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2368157	0.98[ASN][1000 genomes]
rs34832963	0.83[ASN][1000 genomes]
rs35137356	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35311015	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35628321	0.87[ASN][1000 genomes]
rs35769796	0.80[EUR][1000 genomes]
rs36024300	0.80[EUR][1000 genomes]
rs3740232	0.95[EUR][1000 genomes]
rs3758448	0.95[EUR][1000 genomes]
rs4539209	0.91[EUR][1000 genomes]
rs4548529	0.92[ASN][1000 genomes]
rs61840836	0.86[ASN][1000 genomes]
rs7068611	0.87[ASN][1000 genomes]
rs7068633	0.94[ASN][1000 genomes]
rs7072451	0.95[EUR][1000 genomes]
rs7079780	0.97[EUR][1000 genomes]
rs7080516	0.91[ASN][1000 genomes]
rs7081905	0.97[EUR][1000 genomes]
rs7095559	0.95[EUR][1000 genomes]
rs7096646	0.97[EUR][1000 genomes]
rs7476324	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7894273	0.85[ASN][1000 genomes]
rs7895318	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7895734	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7898544	0.84[ASN][1000 genomes]
rs7899450	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7899567	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7899880	0.86[ASN][1000 genomes]
rs7901158	0.80[ASN][1000 genomes]
rs7903895	0.97[ASN][1000 genomes]
rs7904870	0.84[ASN][1000 genomes]
rs7906251	0.83[ASN][1000 genomes]
rs7907187	0.91[ASN][1000 genomes]
rs7908466	0.95[ASN][1000 genomes]
rs7912435	0.89[ASN][1000 genomes]
rs7913502	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7913733	0.86[ASN][1000 genomes]
rs7916320	0.85[ASN][1000 genomes]
rs7921390	0.88[ASN][1000 genomes]
rs949896	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9629915	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26428000-26436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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