Variant report

Variant	rs2368157
Chromosome Location	chr10:26430534-26430535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:171)

rs_ID	r²[population]
rs10082469	0.98[ASN][1000 genomes]
rs10508710	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10828953	0.91[ASN][1000 genomes]
rs10828955	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11014925	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014929	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs11014931	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11014932	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11014933	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11014934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11014935	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11014936	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11014940	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs11014951	0.84[ASN][1000 genomes]
rs11014959	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11014976	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11593128	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11593320	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs11598861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11598907	0.89[CHB][hapmap]
rs11812518	0.85[ASN][1000 genomes]
rs11819592	0.99[ASN][1000 genomes]
rs12243741	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12246202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12247318	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs12247598	0.84[ASN][1000 genomes]
rs12247650	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12247680	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12248210	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12248769	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12249006	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12252534	0.81[ASN][1000 genomes]
rs12252546	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12252825	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12253015	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12260321	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs12261502	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12262670	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12263561	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12263990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12263998	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12265882	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12266221	0.80[ASN][1000 genomes]
rs12266309	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12267071	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12267078	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12267297	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12411554	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs12569739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12572400	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs12765553	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12765561	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12766250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12766929	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12767114	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12767805	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs12768879	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12770421	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs12770526	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12770618	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12771164	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12771414	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12772112	0.81[ASN][1000 genomes]
rs12772392	0.95[ASN][1000 genomes]
rs12773856	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12774270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12775972	0.90[CHB][hapmap]
rs12776584	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12777006	0.82[ASN][1000 genomes]
rs12780744	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12781790	1.00[JPT][hapmap]
rs12784683	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1339808	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1339809	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1339810	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1339812	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1339814	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1339815	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1339816	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs1402436	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1402437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1402438	0.90[ASN][1000 genomes]
rs1416860	0.94[CHB][hapmap];0.88[JPT][hapmap]
rs1521029	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1521030	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1521032	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1521033	0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1521034	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1539323	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1546701	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs1546702	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1591906	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17666079	0.81[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap]
rs17739106	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs17739425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17813720	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1818747	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1935484	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2051000	0.91[ASN][1000 genomes]
rs2090797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2096176	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2139795	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2176937	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2176940	0.91[ASN][1000 genomes]
rs2176941	0.92[ASN][1000 genomes]
rs2226129	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2368120	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2368158	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34832963	0.85[ASN][1000 genomes]
rs34879813	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs35137356	0.88[ASN][1000 genomes]
rs35628321	0.89[ASN][1000 genomes]
rs3740231	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3758441	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3758443	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3758444	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3758447	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs3817419	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs3824700	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4313469	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs4378287	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4548529	0.90[ASN][1000 genomes]
rs4575167	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4581343	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4581344	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs4626968	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs4631780	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs5012431	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs61840836	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61849336	0.81[ASN][1000 genomes]
rs6482532	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7068611	0.88[ASN][1000 genomes]
rs7068633	0.96[ASN][1000 genomes]
rs7073081	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7079780	0.92[AFR][1000 genomes]
rs7080516	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7081905	0.91[AFR][1000 genomes]
rs7084000	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7084483	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7085103	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7091566	0.88[CEU][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7093989	1.00[CEU][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs7095668	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7095982	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7096274	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7096646	0.88[AFR][1000 genomes]
rs7097387	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7893838	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7894273	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7894301	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7895318	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7895734	0.96[ASN][1000 genomes]
rs7898544	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7899450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7899567	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7899880	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7901158	0.80[ASN][1000 genomes]
rs7903895	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904870	0.85[ASN][1000 genomes]
rs7906251	0.85[ASN][1000 genomes]
rs7907187	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7908466	0.97[ASN][1000 genomes]
rs7910497	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7911700	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7912435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7913502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7913733	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7915315	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs7916320	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7917879	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7921390	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26402000-26436200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26428000-26436400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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