Variant report

Variant	rs12266309
Chromosome Location	chr10:26461232-26461233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10508714	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10764598	1.00[ASN][1000 genomes]
rs10828955	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11014959	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs11014976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014979	1.00[ASN][1000 genomes]
rs11014984	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11593041	1.00[ASN][1000 genomes]
rs12247347	0.98[ASN][1000 genomes]
rs12247680	0.95[EUR][1000 genomes]
rs12258401	1.00[ASN][1000 genomes]
rs12258453	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12261502	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12262728	1.00[ASN][1000 genomes]
rs12267078	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12411554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12569739	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12765561	0.83[CEU][hapmap]
rs12774270	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1342319	0.91[ASN][1000 genomes]
rs1342320	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1539323	0.94[EUR][1000 genomes]
rs17666079	0.81[CEU][hapmap]
rs17739425	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1818747	0.95[EUR][1000 genomes]
rs1935484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096176	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2226129	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2368157	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2368158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740231	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3758447	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758448	1.00[ASN][1000 genomes]
rs3758449	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4539209	1.00[ASN][1000 genomes]
rs4575167	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61840836	0.95[EUR][1000 genomes]
rs6482531	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6482532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7072451	1.00[ASN][1000 genomes]
rs7079125	0.92[ASN][1000 genomes]
rs7079780	0.93[ASN][1000 genomes]
rs7080516	0.96[EUR][1000 genomes]
rs7081905	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7082411	0.91[ASN][1000 genomes]
rs7084000	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7085103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7091566	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093989	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7095559	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7096646	0.95[ASN][1000 genomes]
rs7476324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7898544	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs7903895	0.96[EUR][1000 genomes]
rs7907187	0.96[EUR][1000 genomes]
rs7912435	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs7920488	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26453800-26466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26456600-26461600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:26456800-26461800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr10:26456800-26461800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:26458400-26461600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:26459400-26466800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:26460600-26461600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:26460800-26461400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:26460800-26462800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:26461000-26461400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:26461000-26464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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