Variant report

Variant	rs6482531
Chromosome Location	chr10:26453799-26453800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:26453764-26453929	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
MYO3A	TF binding region

Extended variants
information (count: 265 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:264)

rs_ID	r²[population]
rs10508710	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs10508714	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10764598	0.97[ASN][1000 genomes]
rs10828945	0.85[EUR][1000 genomes]
rs10828946	0.85[EUR][1000 genomes]
rs10828955	0.86[ASN][1000 genomes]
rs11014928	0.85[EUR][1000 genomes]
rs11014929	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11014931	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11014932	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11014933	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11014934	0.83[GIH][hapmap]
rs11014935	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11014936	1.00[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs11014938	0.85[EUR][1000 genomes]
rs11014939	0.85[EUR][1000 genomes]
rs11014940	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs11014944	0.85[EUR][1000 genomes]
rs11014945	0.85[EUR][1000 genomes]
rs11014946	0.81[EUR][1000 genomes]
rs11014947	0.85[EUR][1000 genomes]
rs11014948	0.85[EUR][1000 genomes]
rs11014951	0.90[EUR][1000 genomes]
rs11014959	0.95[GIH][hapmap]
rs11014976	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11014979	0.97[ASN][1000 genomes]
rs11014984	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11593041	0.97[ASN][1000 genomes]
rs11593128	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs11595393	0.85[EUR][1000 genomes]
rs11812518	0.89[EUR][1000 genomes]
rs11814295	0.85[EUR][1000 genomes]
rs12240279	0.85[EUR][1000 genomes]
rs12241851	0.85[EUR][1000 genomes]
rs12242258	0.85[EUR][1000 genomes]
rs12242396	0.86[EUR][1000 genomes]
rs12243741	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12244889	0.84[EUR][1000 genomes]
rs12247347	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12247598	0.90[EUR][1000 genomes]
rs12248210	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12248769	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12249006	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12252825	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12253015	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12258401	0.97[ASN][1000 genomes]
rs12258453	0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12260321	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12261502	0.95[GIH][hapmap]
rs12262265	0.85[EUR][1000 genomes]
rs12262670	0.85[GIH][hapmap]
rs12262728	0.97[ASN][1000 genomes]
rs12263561	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12263812	0.83[EUR][1000 genomes]
rs12263847	0.85[EUR][1000 genomes]
rs12263990	0.83[GIH][hapmap]
rs12263998	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12264250	0.86[EUR][1000 genomes]
rs12265882	0.84[CEU][hapmap];0.92[EUR][1000 genomes]
rs12266309	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12267071	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12411554	0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12569363	0.85[EUR][1000 genomes]
rs12569739	0.95[GIH][hapmap]
rs12570534	0.85[EUR][1000 genomes]
rs12572400	0.83[GIH][hapmap]
rs12761327	0.85[EUR][1000 genomes]
rs12761590	0.84[EUR][1000 genomes]
rs12765553	0.85[EUR][1000 genomes]
rs12765561	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12766929	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12767114	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12767805	0.92[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs12768299	0.85[EUR][1000 genomes]
rs12768454	0.85[EUR][1000 genomes]
rs12768754	0.84[EUR][1000 genomes]
rs12768879	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12768930	0.84[EUR][1000 genomes]
rs12769263	0.85[EUR][1000 genomes]
rs12770526	1.00[CEU][hapmap]
rs12770618	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs12771164	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12771414	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12772112	0.85[EUR][1000 genomes]
rs12772392	0.93[EUR][1000 genomes]
rs12772553	0.83[EUR][1000 genomes]
rs12773390	0.85[EUR][1000 genomes]
rs12773513	0.85[EUR][1000 genomes]
rs12773856	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs12774885	0.81[EUR][1000 genomes]
rs12774889	0.85[EUR][1000 genomes]
rs12774892	0.81[EUR][1000 genomes]
rs12775228	0.85[EUR][1000 genomes]
rs12775359	0.85[EUR][1000 genomes]
rs12775421	0.85[EUR][1000 genomes]
rs12776584	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12776958	0.85[EUR][1000 genomes]
rs12777006	0.88[EUR][1000 genomes]
rs12779671	0.86[EUR][1000 genomes]
rs12780744	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12781392	0.84[EUR][1000 genomes]
rs12781790	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12784526	0.85[EUR][1000 genomes]
rs12784683	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12784717	0.85[EUR][1000 genomes]
rs12784877	0.85[EUR][1000 genomes]
rs12785093	0.83[EUR][1000 genomes]
rs12785116	0.85[EUR][1000 genomes]
rs1339809	0.83[GIH][hapmap]
rs1339810	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1339812	0.85[GIH][hapmap]
rs1339814	0.83[GIH][hapmap]
rs1339816	0.83[GIH][hapmap]
rs1342319	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1342320	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1402436	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1402438	0.91[EUR][1000 genomes]
rs1521029	0.96[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1521030	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs1521031	0.85[EUR][1000 genomes]
rs1521032	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs1521033	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs1521034	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs1546701	0.83[GIH][hapmap]
rs1546702	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1578218	0.84[EUR][1000 genomes]
rs1591906	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs17666079	0.91[GIH][hapmap]
rs17666328	0.84[EUR][1000 genomes]
rs17666400	0.86[EUR][1000 genomes]
rs17666458	0.83[EUR][1000 genomes]
rs17666471	0.86[EUR][1000 genomes]
rs17666495	0.86[EUR][1000 genomes]
rs17666501	0.85[EUR][1000 genomes]
rs17738967	0.85[EUR][1000 genomes]
rs17738985	0.84[EUR][1000 genomes]
rs17739106	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs17739425	0.98[GIH][hapmap]
rs1935484	0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2051000	0.92[EUR][1000 genomes]
rs2096176	0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2139795	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2176937	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2176940	0.92[EUR][1000 genomes]
rs2176942	0.85[EUR][1000 genomes]
rs2226129	0.91[ASN][1000 genomes]
rs2368120	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2368158	0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs34089187	0.85[EUR][1000 genomes]
rs34135459	0.85[EUR][1000 genomes]
rs34311739	0.84[EUR][1000 genomes]
rs34353852	0.85[EUR][1000 genomes]
rs34457588	0.86[EUR][1000 genomes]
rs34474695	0.86[EUR][1000 genomes]
rs34558407	0.84[EUR][1000 genomes]
rs34580592	0.85[EUR][1000 genomes]
rs34756309	0.84[EUR][1000 genomes]
rs34832963	0.88[EUR][1000 genomes]
rs34834344	0.85[EUR][1000 genomes]
rs34879813	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs34967200	0.85[EUR][1000 genomes]
rs35000419	0.85[EUR][1000 genomes]
rs35158540	0.86[EUR][1000 genomes]
rs35177483	0.86[EUR][1000 genomes]
rs35251452	0.85[EUR][1000 genomes]
rs35616188	0.82[EUR][1000 genomes]
rs35628321	0.86[EUR][1000 genomes]
rs35636005	0.85[EUR][1000 genomes]
rs3740231	0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3740232	0.91[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3758441	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs3758443	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs3758444	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs3758447	0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3758448	0.97[ASN][1000 genomes]
rs3758449	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817417	0.85[EUR][1000 genomes]
rs3817418	0.85[EUR][1000 genomes]
rs3817419	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs3817421	0.85[EUR][1000 genomes]
rs3824695	0.85[EUR][1000 genomes]
rs3824696	0.85[EUR][1000 genomes]
rs3824700	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs3824701	0.85[EUR][1000 genomes]
rs3824702	0.85[EUR][1000 genomes]
rs3824703	0.85[EUR][1000 genomes]
rs3824704	0.85[EUR][1000 genomes]
rs3824705	0.85[EUR][1000 genomes]
rs4313469	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4378287	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs4539209	0.97[ASN][1000 genomes]
rs4548528	0.85[EUR][1000 genomes]
rs4548529	0.88[EUR][1000 genomes]
rs4575167	0.89[ASN][1000 genomes]
rs4581343	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4581344	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4631780	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs4998836	0.85[EUR][1000 genomes]
rs4998838	0.85[EUR][1000 genomes]
rs4998839	0.85[EUR][1000 genomes]
rs4998840	0.85[EUR][1000 genomes]
rs5012431	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs55752594	0.85[EUR][1000 genomes]
rs56011042	0.85[EUR][1000 genomes]
rs56403024	0.85[EUR][1000 genomes]
rs57335787	0.83[EUR][1000 genomes]
rs58217723	0.85[EUR][1000 genomes]
rs59180311	0.85[EUR][1000 genomes]
rs59764643	0.85[EUR][1000 genomes]
rs61840796	0.84[EUR][1000 genomes]
rs61840797	0.85[EUR][1000 genomes]
rs61840798	0.85[EUR][1000 genomes]
rs61846589	0.85[EUR][1000 genomes]
rs61846590	0.85[EUR][1000 genomes]
rs61849336	0.85[EUR][1000 genomes]
rs61849337	0.83[EUR][1000 genomes]
rs61849338	0.83[EUR][1000 genomes]
rs61849340	0.85[EUR][1000 genomes]
rs61849343	0.85[EUR][1000 genomes]
rs61849344	0.85[EUR][1000 genomes]
rs6482532	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs66657341	0.84[EUR][1000 genomes]
rs67216996	0.85[EUR][1000 genomes]
rs7068611	0.86[EUR][1000 genomes]
rs7068633	0.93[EUR][1000 genomes]
rs7072451	0.97[ASN][1000 genomes]
rs7073081	0.86[EUR][1000 genomes]
rs7074453	0.82[EUR][1000 genomes]
rs7079125	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079780	0.91[ASN][1000 genomes]
rs7081905	0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7082411	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7084000	0.92[ASN][1000 genomes]
rs7084483	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7085103	0.91[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7091566	0.90[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7093989	0.89[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7095515	0.85[EUR][1000 genomes]
rs7095559	0.91[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7095668	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7095982	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7096274	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7096646	0.92[ASN][1000 genomes]
rs7097387	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7097468	0.85[EUR][1000 genomes]
rs73610386	0.84[EUR][1000 genomes]
rs7476324	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7893838	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7894273	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7894301	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7899567	0.83[GIH][hapmap]
rs7899880	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs7901158	0.81[EUR][1000 genomes]
rs7904870	0.91[EUR][1000 genomes]
rs7906251	0.89[EUR][1000 genomes]
rs7908466	0.95[EUR][1000 genomes]
rs7910497	0.85[EUR][1000 genomes]
rs7913733	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs7914972	0.83[EUR][1000 genomes]
rs7915315	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7916320	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs7917879	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7920488	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7921390	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26449400-26455200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26451200-26456600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:26451600-26456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr10:26451800-26454200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26452000-26456800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:26452000-26456800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:26452200-26456600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:26453200-26454200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:26453400-26453800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:26453400-26453800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:26453400-26453800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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