Variant report

Variant	rs4575167
Chromosome Location	chr10:26444487-26444488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10764598	0.92[ASN][1000 genomes]
rs10828955	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11014959	0.96[EUR][1000 genomes]
rs11014976	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11014979	0.92[ASN][1000 genomes]
rs11014984	0.92[ASN][1000 genomes]
rs11593041	0.92[ASN][1000 genomes]
rs12247347	0.90[ASN][1000 genomes]
rs12247680	0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12258401	0.92[ASN][1000 genomes]
rs12258453	0.92[ASN][1000 genomes]
rs12261502	0.96[EUR][1000 genomes]
rs12262728	0.92[ASN][1000 genomes]
rs12266309	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12267078	0.92[EUR][1000 genomes]
rs12411554	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12569739	0.97[EUR][1000 genomes]
rs12774270	0.95[EUR][1000 genomes]
rs1342319	0.93[ASN][1000 genomes]
rs1342320	0.92[ASN][1000 genomes]
rs1539323	0.94[EUR][1000 genomes]
rs17739425	0.97[EUR][1000 genomes]
rs1818747	0.95[EUR][1000 genomes]
rs1935484	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2096176	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2226129	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368157	0.93[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2368158	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3740231	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3740232	0.92[ASN][1000 genomes]
rs3758447	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3758448	0.92[ASN][1000 genomes]
rs3758449	0.95[ASN][1000 genomes]
rs4539209	0.92[ASN][1000 genomes]
rs61840836	0.96[EUR][1000 genomes]
rs6482531	0.89[ASN][1000 genomes]
rs6482532	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7072451	0.92[ASN][1000 genomes]
rs7079125	0.94[ASN][1000 genomes]
rs7079780	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7080516	0.97[EUR][1000 genomes]
rs7081905	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7082411	0.93[ASN][1000 genomes]
rs7084000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7085103	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7091566	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7093989	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095559	0.92[ASN][1000 genomes]
rs7096646	0.95[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7476324	0.97[ASN][1000 genomes]
rs7898544	0.96[EUR][1000 genomes]
rs7903895	0.97[EUR][1000 genomes]
rs7907187	0.97[EUR][1000 genomes]
rs7912435	0.97[EUR][1000 genomes]
rs7920488	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26438000-26451000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26439600-26444600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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