Variant report

Variant	rs12258401
Chromosome Location	chr10:26451902-26451903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10082469	0.95[EUR][1000 genomes]
rs10508714	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10764598	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828953	0.95[EUR][1000 genomes]
rs10828955	0.88[ASN][1000 genomes]
rs11014924	0.85[EUR][1000 genomes]
rs11014925	0.86[EUR][1000 genomes]
rs11014934	0.86[EUR][1000 genomes]
rs11014976	1.00[ASN][1000 genomes]
rs11014979	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11014984	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593041	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598861	0.95[EUR][1000 genomes]
rs11819592	0.95[EUR][1000 genomes]
rs12246202	0.93[EUR][1000 genomes]
rs12247347	0.98[ASN][1000 genomes]
rs12247650	0.86[EUR][1000 genomes]
rs12252534	0.86[EUR][1000 genomes]
rs12258453	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262670	0.86[EUR][1000 genomes]
rs12262728	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12263990	0.95[EUR][1000 genomes]
rs12266221	0.90[EUR][1000 genomes]
rs12266309	1.00[ASN][1000 genomes]
rs12267297	0.86[EUR][1000 genomes]
rs12411554	1.00[ASN][1000 genomes]
rs12572400	0.87[EUR][1000 genomes]
rs12572695	0.85[EUR][1000 genomes]
rs12766250	0.86[EUR][1000 genomes]
rs12768268	0.86[EUR][1000 genomes]
rs12770421	0.89[EUR][1000 genomes]
rs1339808	0.84[EUR][1000 genomes]
rs1339809	0.84[EUR][1000 genomes]
rs1339812	0.84[EUR][1000 genomes]
rs1339813	0.86[EUR][1000 genomes]
rs1339814	0.86[EUR][1000 genomes]
rs1339815	0.87[EUR][1000 genomes]
rs1339816	0.87[EUR][1000 genomes]
rs1342319	0.91[ASN][1000 genomes]
rs1342320	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361376	0.84[EUR][1000 genomes]
rs1402437	0.95[EUR][1000 genomes]
rs1416860	0.86[EUR][1000 genomes]
rs1546701	0.94[EUR][1000 genomes]
rs17813720	0.84[EUR][1000 genomes]
rs1856603	0.86[EUR][1000 genomes]
rs1915478	0.86[EUR][1000 genomes]
rs1935484	1.00[ASN][1000 genomes]
rs1949616	0.86[EUR][1000 genomes]
rs2090797	0.93[EUR][1000 genomes]
rs2096176	0.93[ASN][1000 genomes]
rs2176941	0.95[EUR][1000 genomes]
rs2226129	0.93[ASN][1000 genomes]
rs2368158	0.93[ASN][1000 genomes]
rs35137356	0.92[EUR][1000 genomes]
rs3740231	1.00[ASN][1000 genomes]
rs3740232	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758447	1.00[ASN][1000 genomes]
rs3758448	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758449	0.93[ASN][1000 genomes]
rs4539209	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575167	0.92[ASN][1000 genomes]
rs6482531	0.97[ASN][1000 genomes]
rs6482532	1.00[ASN][1000 genomes]
rs7072451	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079125	0.92[ASN][1000 genomes]
rs7079780	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7081905	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7082411	0.91[ASN][1000 genomes]
rs7084000	0.95[ASN][1000 genomes]
rs7085103	0.93[ASN][1000 genomes]
rs7091566	0.93[ASN][1000 genomes]
rs7093989	0.95[ASN][1000 genomes]
rs7095559	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096646	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7476324	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7895318	0.95[EUR][1000 genomes]
rs7895734	0.95[EUR][1000 genomes]
rs7899450	0.86[EUR][1000 genomes]
rs7899567	0.86[EUR][1000 genomes]
rs7913502	0.95[EUR][1000 genomes]
rs7920488	0.98[ASN][1000 genomes]
rs949896	0.84[EUR][1000 genomes]
rs9629915	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26440800-26473400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26447000-26453400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:26449400-26455200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26450200-26452000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:26450400-26452200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:26450800-26452000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:26451000-26452000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr10:26451200-26456600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:26451600-26452400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:26451600-26456800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:26451800-26454200	Weak transcription	H9 Cell Line	embryonic stem cell

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