Variant report

Variant	rs7079780
Chromosome Location	chr10:26437506-26437507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10082469	0.97[EUR][1000 genomes]
rs10508714	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10764598	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10828953	0.97[EUR][1000 genomes]
rs10828955	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11014924	0.87[EUR][1000 genomes]
rs11014925	0.88[EUR][1000 genomes]
rs11014934	0.87[EUR][1000 genomes]
rs11014976	0.93[ASN][1000 genomes]
rs11014979	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11014984	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11593041	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598861	0.97[EUR][1000 genomes]
rs11819592	0.97[EUR][1000 genomes]
rs12246202	0.95[EUR][1000 genomes]
rs12247347	0.91[ASN][1000 genomes]
rs12247650	0.88[EUR][1000 genomes]
rs12247680	0.83[AFR][1000 genomes]
rs12252534	0.87[EUR][1000 genomes]
rs12258401	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12258453	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12262670	0.88[EUR][1000 genomes]
rs12262728	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12263990	0.97[EUR][1000 genomes]
rs12266221	0.92[EUR][1000 genomes]
rs12266309	0.93[ASN][1000 genomes]
rs12267297	0.88[EUR][1000 genomes]
rs12411554	0.93[ASN][1000 genomes]
rs12572400	0.89[EUR][1000 genomes]
rs12572695	0.87[EUR][1000 genomes]
rs12766250	0.88[EUR][1000 genomes]
rs12768268	0.88[EUR][1000 genomes]
rs12770421	0.90[EUR][1000 genomes]
rs1339808	0.86[EUR][1000 genomes]
rs1339809	0.86[EUR][1000 genomes]
rs1339812	0.86[EUR][1000 genomes]
rs1339813	0.88[EUR][1000 genomes]
rs1339814	0.88[EUR][1000 genomes]
rs1339815	0.89[EUR][1000 genomes]
rs1339816	0.89[EUR][1000 genomes]
rs1342319	0.98[ASN][1000 genomes]
rs1342320	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1361376	0.86[EUR][1000 genomes]
rs1402437	0.97[EUR][1000 genomes]
rs1416860	0.88[EUR][1000 genomes]
rs1546701	0.95[EUR][1000 genomes]
rs17813720	0.86[EUR][1000 genomes]
rs1856603	0.87[EUR][1000 genomes]
rs1915478	0.88[EUR][1000 genomes]
rs1935484	0.93[ASN][1000 genomes]
rs1949616	0.88[EUR][1000 genomes]
rs2090797	0.94[EUR][1000 genomes]
rs2096176	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs2176941	0.97[EUR][1000 genomes]
rs2226129	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2368157	0.92[AFR][1000 genomes]
rs2368158	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35137356	0.93[EUR][1000 genomes]
rs3740231	0.93[ASN][1000 genomes]
rs3740232	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758447	0.93[ASN][1000 genomes]
rs3758448	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758449	0.96[ASN][1000 genomes]
rs4539209	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4575167	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6482531	0.91[ASN][1000 genomes]
rs6482532	0.93[ASN][1000 genomes]
rs7072451	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079125	0.96[ASN][1000 genomes]
rs7081905	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7082411	0.98[ASN][1000 genomes]
rs7084000	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7085103	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7091566	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7093989	0.99[ASN][1000 genomes]
rs7095559	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7096646	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7476324	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7895318	0.97[EUR][1000 genomes]
rs7895734	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7899450	0.88[EUR][1000 genomes]
rs7899567	0.88[EUR][1000 genomes]
rs7913502	0.97[EUR][1000 genomes]
rs7920488	0.91[ASN][1000 genomes]
rs949896	0.86[EUR][1000 genomes]
rs9629915	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26436400-26439000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26436600-26439400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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